Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00849 ATGGATTCCCAATCTCAATCCCAATCCCAACCAATTCTCCCTCCGATGGAACCTCCCGAAGATCTCTCCACCGTTTGGGACCTCTCTTATCTCCTCGACTTCAATCTAGACGACGAAATTCCACAACTCCCTCCTCTTCTTCCAAACCCTAACCCTAATTCTTATCCTAATGATGATAATAATGATAAGATCCGAAAACGTGACCCGAGATTAACTTGCTCCAACTTTCTCGCGGGTCATGTACCATGTGCATGTCCCGAACTCGATGCTTTGCTTGAAGATAAAGGTTTACCGGGAAAGAAACGTGCTCGGACGGTGCGTGCATCTTCATCGGCACGGTGTCAGGTTCCTGGTTGTGAAGTTGATATCTCTGAACTTAAAGGCTATCACCGACGACATAGGGTTTGTTTACGATGTGCTAATGCTGTTACTGTTGTTCTTGATGGTGAAGCCAAAAGATACTGTCAACAGTGTGGAAAGTTTCATGTTTTATCGGATTTCGATGAAGGGAAACGGAGTTGTAGACGGAAATTGGAGCGTCATAATAATAGGAGGAGGAGAAAGCCTGCTGATTCTGTAGCTGGAGTTGATAATGAACTTCAAACTGTTACTCAAAATGATGATTCCAATTGTGATGGAGAAGCAGGAATAGATTATTCGAATTTGAGTAGTGAGAATATTGAAAAAAGAGTGTCACCGGATCATGAAGAAGAACCGATTGCTACTGGGTCCTCAACTCCAGAGACCCAGAATATTAATGGTGATGGTGTTGTGTCCTTTGCTGCTTCTGCTGAAGAACAAGTGAATATTGGAAAAGATGTTTCCAATCTTTCCAAGTCGCCTTCATTTTGTGACAATAAGAGTGATTATTCGTCTATGTGCCAAACAGGTCGGGTTTCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCCAGAAGGCTGCGGCTTCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATTCTTACAGTTTTTATTGCAATGCCAAATGTTATGTGGATAAATTTACTCAAAGATCCTATGTATTATGTGCGCGAACTTGTTGCTCCCAGAAACATGCTATCTGGAAGAGGCACCGCTCTAATTCATCTGAATGACATGATTTTCAGTGTTATGAAAGATGGAAGTTCTGTGATGAAAGTCGAGGTAAACAAGCAGGCACCTAAGCTTCACTATATTCATCCCACATGCTTTGAAGCAGGAAAACCCATGGAGTTTTTTGTTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTATGGGAAGTATATGAAGTATGAGTATTGCATTCCGTCTCCACATAACTGGGCTGAAGACAATAATTCTTGTGCTTTTGATAATCAATTATATAAGATATGTGTCCCTCATATTGAGGAAAATCTCCTGGGGCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTCATTCCTGTACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGATATTGCAACAAAAACTAGATGTCTCTCTCCTTTCTAAAAAGTTTCGGTCTGCATCTGGTGGTTCTGTTTGTAGCTCATGTGAAGCTTTTGTACAAATTCACTCATCGTCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGATCCTACTTCAGAAAATTTTGAGAGAATAATATCTGCTTCACAGATTCAAAGATATTGCTATTTGTTGGATTTTCTAATAAGCAATGATTCAACTATCATTTTGGGTAAAATATTGCCAAATTTGATAATTTTAACAGAAAGCATGAAATCCAATATAAGTGATGTTGACATGGTTCAACTACTGAAGTGCATGCATAATGCCAAAGAAGCTATTTGTCAGAAAGGTGGAGGTCTAGTTTTGCACTCCAAAATGGAAAGCTTTACACCTGGTCAACGCTGTTCCCAAGATGACAAGTTATCGGTTGTTGAAGCTAATAGTCAGGGTATCCAGTTTAGAGCCGATGCAGAGTTGGGAGTTCTGAGAAGTCTCGCGTCTGATGAAAAAAGTCAGAAGATACCGCTTTTGAAAAGGGATATTATAATGAACGTGGAAGAGTTTCCCAGAAGATGTGACCGTCGAAATCTTACCAGGGGATTCTTGAGCTCTCGACCAACTATTTTTGTCCTTGTTTCAGTTGTTGTTTGTCTTATGGTGTGTGTATCCATATTTCATCATGGGAGGGTGAACGAGTTAGCAGTGTCCATTAGAAGGTGTTTGTTTAACCATTAA 2310 0.4035 MDSQSQSQSQPILPPMEPPEDLSTVWDLSYLLDFNLDDEIPQLPPLLPNPNPNSYPNDDNNDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDKGLPGKKRARTVRASSSARCQVPGCEVDISELKGYHRRHRVCLRCANAVTVVLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSVAGVDNELQTVTQNDDSNCDGEAGIDYSNLSSENIEKRVSPDHEEEPIATGSSTPETQNINGDGVVSFAASAEEQVNIGKDVSNLSKSPSFCDNKSDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTVFIAMPNVMWINLLKDPMYYVRELVAPRNMLSGRGTALIHLNDMIFSVMKDGSSVMKVEVNKQAPKLHYIHPTCFEAGKPMEFFVCGSNLLQPKFRLLVSFYGKYMKYEYCIPSPHNWAEDNNSCAFDNQLYKICVPHIEENLLGPAFIEVENESGLSNFIPVLIGDKEICTEMKILQQKLDVSLLSKKFRSASGGSVCSSCEAFVQIHSSSSDLLVDIAWLLKDPTSENFERIISASQIQRYCYLLDFLISNDSTIILGKILPNLIILTESMKSNISDVDMVQLLKCMHNAKEAICQKGGGLVLHSKMESFTPGQRCSQDDKLSVVEANSQGIQFRADAELGVLRSLASDEKSQKIPLLKRDIIMNVEEFPRRCDRRNLTRGFLSSRPTIFVLVSVVVCLMVCVSIFHHGRVNELAVSIRRCLFNH 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00849 769 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00849 769 MobiDBLite consensus disorder prediction 42 66 - -
Trre3g00849 769 MobiDBLite consensus disorder prediction 203 227 - -
Trre3g00849 769 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 591 IPR044817 GO:0003677
Trre3g00849 769 Gene3D - 105 175 IPR036893 GO:0003677|GO:0005634
Trre3g00849 769 SUPERFAMILY SBT domain 112 192 IPR036893 GO:0003677|GO:0005634
Trre3g00849 769 MobiDBLite consensus disorder prediction 203 254 - -
Trre3g00849 769 Pfam SBP domain 114 188 IPR004333 GO:0003677
Trre3g00849 769 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00849 Trre-Chr3 5996376 6002001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00849 11 763 SBP-box Gene Family AT5G18830 45.881 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre3g00849 SBP 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00849 - - aprc:113863838 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00849 3 5996376 6002001 Trre3g00849 3 5996376 6002001 ECH