Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00844 ATGCATACGGTTGTTTTATTATGCGACGAGAATTTTAACCAGGATATAGTGACTGAGGCCGGGCTAAACAAAGAAATTTCAGCTAATGGATCCAGCGGAAAGCGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGAAGCACATGTGGTGGAAAGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGATTTTTTGCGGGTTTTGAGCTTCAAAAGAAAAGCGAATGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTCTAAGACAGCTGCAGACAGTACTAATAAGGCCCCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCGGTTTCACATGCGCCAAATCTGTCCCCTTCAGTTGCTACACCCGTGTCTGCAAGGACATATAATGAACAACAGATTAAGCCACATAAAGATGCTAAATCTAAGGTTTCAAGGTGCCTAACGATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGGACTGACCAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACAGACAGGATCAGCACAGCTTAAGTTCAGAGGCAATAAGTGCTTGGCAAGACTTCGTGGTGCTTGTCTTGATAAGCACGATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCCTTTACTTTGGGCCTCCTGGCATCTGTTTTTGCAATCGTCCTTGCAATTAGAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAATTGCTATGGGACTCAACTATATGTATATCCAGTATGTGACATGGAGACTCCAGGTCTCTATCAATGATAACCCAGTATGA 1260 0.4087 MHTVVLLCDENFNQDIVTEAGLNKEISANGSSGKRPDISLQVPPRPLGFGSTCGGKVLDHSQSFSKGISSPKDFLRVLSFKRKANVADGERSSLLNSDSKTAADSTNKAPISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDAKSKVSRCLTIPARNVVIVRSVSFNTRTDQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNRQDQHSLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSILGFGIAMGLNYMYIQYVTWRLQVSINDNPV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00844 419 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Trre3g00844 419 MobiDBLite consensus disorder prediction 89 109 - -
Trre3g00844 419 CDD RING_CH-C4HC3_MARCH 213 260 - -
Trre3g00844 419 SMART ringv_2 212 260 IPR011016 GO:0008270
Trre3g00844 419 SUPERFAMILY RING/U-box 209 263 - -
Trre3g00844 419 PANTHER OS02G0165000 PROTEIN 60 413 - -
Trre3g00844 419 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Trre3g00844 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 267 IPR013083 -
Trre3g00844 419 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00844 Trre-Chr3 5956526 5959927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00844 199 318 C3H Transcription Factor Family AT2G37950 30.000 1.63e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00844 - - gmx:100527094 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00844 3 5956526 5959927 Trre3g00844 3 5956526 5959927 ECH