Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00843 ATGCAAGAACATCATCAACCACTATCCACTCATGAAGCTCCCAAGATTTCCCACCAGACTGAGGCCGGGCTAAACAAAGAAATTTCAGCTAATGGATCCAGCGGAAAGCGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGAAGCACATGTGGTGGAAAGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGATTTTTTGCGGGTTTTGAGCTTCAAAAGAAAAGCGAATGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTCTAAGACAGCTGCAGACAGTACTAATAAGGCCCCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCGGTTTCACATGCGCCAAATCTGTCCCCTTCAGTTGCTACACCCGTGTCTGCAAGGACATATAATGAACAACAGATTAAGCCACATAAAGATGCTAAATCTAAGGTTTCAAGGTGCCTAACGATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGGACTGACCAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACAGACAGGATCAGCACAGCTTAAGTTCAGAGGCAATAAGTGCTTGGCAAGACTTCGTGGTGCTTGTCTTGATAAGCACGATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCCTTTACTTTGGGCCTCCTGGCATCTGTTTTTGCAATCGTCCTTGCAATTAGAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAATTGCTATGGGACTCAACTATATGTATATCCAGTATGTGACATGGAGACTCCAGGTCTCTATCAATGATAACCCAGTATGA 1266 0.4131 MQEHHQPLSTHEAPKISHQTEAGLNKEISANGSSGKRPDISLQVPPRPLGFGSTCGGKVLDHSQSFSKGISSPKDFLRVLSFKRKANVADGERSSLLNSDSKTAADSTNKAPISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDAKSKVSRCLTIPARNVVIVRSVSFNTRTDQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNRQDQHSLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSILGFGIAMGLNYMYIQYVTWRLQVSINDNPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00843 421 SMART ringv_2 214 262 IPR011016 GO:0008270
Trre3g00843 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Trre3g00843 421 PANTHER OS02G0165000 PROTEIN 21 415 - -
Trre3g00843 421 CDD RING_CH-C4HC3_MARCH 215 262 - -
Trre3g00843 421 MobiDBLite consensus disorder prediction 1 48 - -
Trre3g00843 421 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Trre3g00843 421 MobiDBLite consensus disorder prediction 90 111 - -
Trre3g00843 421 SUPERFAMILY RING/U-box 211 265 - -
Trre3g00843 421 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Trre3g00843 421 MobiDBLite consensus disorder prediction 12 38 - -
Trre3g00843 421 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00843 Trre-Chr3 5956526 5960423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00843 201 320 C3H Transcription Factor Family AT2G37950 30.000 1.39e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00843 - - gmx:100527094 634.024