Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00840 ATGAACCAGTACCACATCTACGAAGCAATTGGTCGCGGAAGATACTCGACTGTGTACAAAGGTAGAAAGAAGAAAACGATCGAGTATTTCGCCATCAAAAGCGTCGATAAATCTCAGAAAACTAAGGTTCTTCAAGAAGTTAGGATTCTTCATACTTTAGATCACCAAAATGTGCTCAAGTTTTATTCATGGTATGAAACTTCTGCTCACTTATGGTTGGTTTTGGAGTATTGTGTTGGTGGGGATCTACTTTCCATATTACGGCAGGATAGTAAACTTCCTGAAGATTCTGTTAATGATCTTGCTTGTTACCTCATCAGAGCTTTGCAGTATTTACATTCAAATGGAATAATTTACTGTGACCTGAAACCATCAAATATCCTACTAGATGAAAATGGATGTGCAAAGCTTTGTGATTTCGGATTGGCAAGAAAGTTAAAAGAGATATCAAAAGTTCCTTCTTCCTCGTTGCCTCAAGCAAAACGGGGAACACCCTCTTACATGGCTCCAGAGCTTTTTGAAGATGGCGGAGTCCATTCTTATGCTTCCGATTTCTGGGCTCTAGGTTGTGTACTATATGAATGTTATGCCGGGAGGCCTCCTTTTGTGGGAAGAGAATTCACTCAGCTTGTGAAATCCATCATTTCAGACCCGACTCCACCTCTCCCTGGCAATCCAAGTCGACCTTTTGTCAATTTAATAAATTCTCTTTTGGTCAAAGATCCAGCTGAAAGAATACAGTGGTCTGAGCTTTGTGGACATGCCTTTTGGAAAACCAAATTCACTCCAGTGCCTCTTCCTCCTCAACCTGCGTTTGATGACATGATAGAGCTACATGCTAAACCATGCTTATCAGAACATAATGGAGATAAGTCTTCTCATAACAGAACCCCTCCCAAATATCGTGAAAAAGACGTGAAAGGGGTACTAAAGAAGGATGAAAACTCTGGTTTAGCATCAAGAGGCATTGAGACACCAACAAGAGCAACACCAAATAGTCACAGAACTCAGACAAAGGGTTCTGGCAGAACACTGCAGAAAGATCCTTCCAATATTAAAAAAGGTTTGAATCTTTTGAGAATGTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATAGACGCTCCTTTCCCAATGGCTCTGAGAAGGATGCCGATGTTAAAATTGAGAATACTGACATGGAACTGGATTTTAATGAGAATAGTGAAGAGGATGCACTTGAAGAAACTGATGGTTCTGAACATACACCTTCTGTGCCCAGTGCAAAAATGGAGAATAGTTTGCAGAATCAAGGAAAAGCGGAGGACACTGAAAATGATACACACCTGTTGGACACTCCATCTGTTACTACTCCTGCCTCAGTTGATTCGAGGTCATTTGATCATGAGTCAACTCCTGACCGTTCTGACATATCTGCTATTTCTCCAAGTGTGAGCCCTCTAGTGAAAAAACAGAGGTTTAAAGAAGACTTGGGATCTGGCCTTGACTCTGATTCTTCTACATCTAACAACTTCTCCCAGGTTATTTGGCACCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGACAAAAGATCAGAAGTCATTCCTTCACTTCCTTTTGAGGCATTGCAAGCACCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCAAAGCCGAATTATAGGCATCTTGAACGGGAGTACCAGCATCGGAGACAAACAGAATGTGGTTAGGTACCTTGAGATGTTGAGCAGTAATGCTGATGCAGCCAATATCTTGACCAATGGGCCGATTATGCTCATTCTCGTAAAGTTGCTACGTCAATCCAAGGCATCAGCTTTACGTGTTCAAATTGCTTCACTGATTGGTCTGTTGATTAGACATTCTACTTTTGTTGATGACAGTTTGGCTAATTCTGGAATTCTAGGTTCATTGACGGATGGCCTTAGGGACAGACACGAAAAAGTGAGGAGGTTTTCTATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACCCAAAGTGCGGACTCTAAGGATAACACTCCGCTTGAATCTCCATCAAAGGACAATAGGACTGCGCATGGTTGGCAGGTTCCAAATTCATTAATTTCCTTGGTGTCATCGATATTGAGGAAAGGGGAAGATGATATAACTCAATTGTATGCACTGAGAACCATTGAGAATATTTGCAGTCAAGGAGGGGTCTGGGTGGGACGTTTTACCAGTCAAGATGTTATTAATAATCTCTGTTATATCTATAGAGCGGCAGGGAAACAGGAAAGCATGAGGCTTACTGCAGGATCATGTTTGGTGCGCTTAGCTCGTTTTAATCCTTCTTCCATTCAGTCTGTTGTAGAGAAACTCTCTTTCAAGGACCTAGCTTCTGCTCTTATCAAAGGAAGTCCACGAGAGCAGCAAATCAGTTTAAATCTTCTTAACATGGCAATGCTTGGAAGTCATATGTTCACAAATGTTGGAAGATACCTTATACAACTTGCAGAGGATAAGAATCTGATACCCAGTCTTTTGGCTCTTGTTGAGCAGGGTAGTGAAGTTTTAAAAGGAAAAGCACTTGTCTTTGTGGCTCTCCTCTGCAAGCACGGTAGGAGGTGGCTTCCCCAGTTCTTTTGTAGCCATAAGTTACTTTCAGTGGTGGATAGGCTGGGAAAAGAGAAGGATGCCTTTGTGCGGCAGTGTTTAGATGCATTTCTGCATATTGTGGCATCTACTATTCCAGGTTTACTGGATATAATAACCGGGGATATCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTTCCCTTACCAGCAGGTCTGCTCCAAAATCCAACATTCATTTGTTTCCCGTGGTCCTTCATCTTCTTGAAAGTTCAGCTTTTAAGCACAAAGTGACGACACTTCCAGTACTACGGCAGTTGGCAAATCTGATAAAACTCGTGGAGGCACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTAGAGTCTCTCACAGAGGAATCTTCTGTGATCCTTGCCAATCCTGACATTTTCATTCGTGAAATCCTCCCTAGTTTGACAGTTCTCTACAAGGGTAACAAGGATGGTGACGCCAGATTTTTGTGTCTTAAAATCTTTTTTGATGTGATGATTATCCTTTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGAATGATCTGAAATATGTATCAAATACACATTTTCTTCCTCTCTACCCGGCCTTGATCGAAGATGAAGATCCTATTCCTATCTTTGCACAGAAGCTTCTTGTCATGCTACTAGAGTTCAGTTTTATTTCAATCCCAGACATTCTACATCTGAAGACAATTTCACAATGCTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGCTGTGTCTTGCTCTGGCTTCTGCTCTTGAAATGGAGTCCAAGTTACTCTCACAATTGAAAGTTGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTATGTGCAAAGGGTATGGAAGATTTGCTGGAGCCAACTCTTGGACTGTGTAGGGCCTTTCTAGCACGTTCAGTCAGCTTTGCAAAAGACTTCAGCCACACAACAGAACCGACTCTCTTAGGTGACTGTCCTGAGGTAAGTGGCGCTGTTGATCCCCAGCAATGCATAAGAGATATAACAGACTTTGGAAGCAACGTTGGTGTCTTCCTAGAGTTGAGTGCATCTAGAGAGACCAGTGTTGCTGATATAGCTTCTCAGTGCGTGGTTTTACTGCTCAAGGCTGCTCCTAGAGAAGCTACCACTGGTCTACTAACAAATCTCCCTAAGGTCACTGTGATCCTAGAATCCTGGAATAAAGGAACCCCTCACTTGACAGTGCAGAGAATGCTTCATGCTTTAGGTTATGCATGCAAGCAGTACTTATTGCATGCAATGATATTATCAATATCAATACCAGAGATTACAAGAATTGAAGTGATAGTTTCAGAACTCAAGAGTTCAACTGTGCCTGCTTTAGCCAAAACTGCTGGTTTGGCAGCCTTGGAGTTGCAGCGGTTACCTCGCTGCATTTGA 4095 0.4183 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLQEVRILHTLDHQNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDSKLPEDSVNDLACYLIRALQYLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKEISKVPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWSELCGHAFWKTKFTPVPLPPQPAFDDMIELHAKPCLSEHNGDKSSHNRTPPKYREKDVKGVLKKDENSGLASRGIETPTRATPNSHRTQTKGSGRTLQKDPSNIKKGLNLLRMSRIAKSNLQKENEKENYRRSFPNGSEKDADVKIENTDMELDFNENSEEDALEETDGSEHTPSVPSAKMENSLQNQGKAEDTENDTHLLDTPSVTTPASVDSRSFDHESTPDRSDISAISPSVSPLVKKQRFKEDLGSGLDSDSSTSNNFSQVIWHPSDLSVRPVMPSRKVDKRSEVIPSLPFEALQAPDFVKMPKEQLEAVQSRIIGILNGSTSIGDKQNVVRYLEMLSSNADAANILTNGPIMLILVKLLRQSKASALRVQIASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDRHEKVRRFSMAALGELLFYISTQSADSKDNTPLESPSKDNRTAHGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGGVWVGRFTSQDVINNLCYIYRAAGKQESMRLTAGSCLVRLARFNPSSIQSVVEKLSFKDLASALIKGSPREQQISLNLLNMAMLGSHMFTNVGRYLIQLAEDKNLIPSLLALVEQGSEVLKGKALVFVALLCKHGRRWLPQFFCSHKLLSVVDRLGKEKDAFVRQCLDAFLHIVASTIPGLLDIITGDIQQMMGGRRHGHISSLTSRSAPKSNIHLFPVVLHLLESSAFKHKVTTLPVLRQLANLIKLVEAPFQGRDDFQITLLRILESLTEESSVILANPDIFIREILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLNDLKYVSNTHFLPLYPALIEDEDPIPIFAQKLLVMLLEFSFISIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASALEMESKLLSQLKVVRRIGNFLEFVCAKGMEDLLEPTLGLCRAFLARSVSFAKDFSHTTEPTLLGDCPEVSGAVDPQQCIRDITDFGSNVGVFLELSASRETSVADIASQCVVLLLKAAPREATTGLLTNLPKVTVILESWNKGTPHLTVQRMLHALGYACKQYLLHAMILSISIPEITRIEVIVSELKSSTVPALAKTAGLAALELQRLPRCI 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00840 1364 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre3g00840 1364 SUPERFAMILY Protein kinase-like (PK-like) 1 283 IPR011009 -
Trre3g00840 1364 MobiDBLite consensus disorder prediction 401 415 - -
Trre3g00840 1364 MobiDBLite consensus disorder prediction 419 439 - -
Trre3g00840 1364 SUPERFAMILY ARM repeat 568 915 IPR016024 -
Trre3g00840 1364 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1361 IPR044591 GO:0000911|GO:0000914|GO:0008017
Trre3g00840 1364 MobiDBLite consensus disorder prediction 448 464 - -
Trre3g00840 1364 MobiDBLite consensus disorder prediction 320 351 - -
Trre3g00840 1364 FunFam Aurora kinase A 1 81 - -
Trre3g00840 1364 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00840 1364 CDD STKc_ULK4 3 257 - -
Trre3g00840 1364 MobiDBLite consensus disorder prediction 283 509 - -
Trre3g00840 1364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trre3g00840 1364 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00840 1364 Gene3D - 552 914 IPR011989 -
Trre3g00840 1364 FunFam Maternal embryonic leucine zipper kinase 1 297 - -
Trre3g00840 1364 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Trre3g00840 1364 MobiDBLite consensus disorder prediction 283 318 - -
Trre3g00840 1364 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00840 1364 MobiDBLite consensus disorder prediction 367 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00840 Trre-Chr3 5930001 5935997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00840 1 263 CBL-interacting serine-threonine protein kinases AT2G25090 31.884 7.24e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Trre3g00840 Pkinase 9.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00840 K17545 - gmx:100777288 2336.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00840 3 5930001 5935997 Trre3g00840 3 5930001 5935997 ECH