Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00837 ATGGCTATAATCAGGAATATATTTGAAGATATGAGATCGAGATCTCAAAGGGCAGTTGCGGTTGAGAAAGAAGAGAAAGTGGCTGTTGGTGATGGTTTAAGACAGAGTTGTTGGGCAAACATGCCACAAGAGCTTCTTCGTGAGGTTCTTGTCAGAATTGAAGCATCTGAGGACACGTGGCCACCTAGGAAAAACGTTGTTGCATGTGCTGGAGTGTGTCGGAACTGGAGAGTCATCACCAAAGAAATCGTTAAAAAACCTGAAATTTCTGCTCAGATTACTTTCCCCATTTCTGTTAAACAGCCTGGTCCTAGGGAGAATCTCCTTCAATGCTTTATAAAGCGCAACCGGTCCACTCAAACGTACTACTTGTATCTCAGTTTAACTGGTTCACTAGGTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAATGCAGACGTCCTACCTGCACTGATTATATCATCTCTCTAGATGGATATGATATGTCAAGAGGAAGCAATTCCTATGTCGGGAAACTGAGATCAAACTTCCTCGGAACAAAGTTCACAGTCTATGATGGTCAGCCACCTCATGCTGGGGCAAAGATCGCAAAAAGTCACTCCACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGAAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTTCTAGGCTCTAGGGGCCCTAGGAGAATGCACTGCGTCATGGATTCCATTCCTTCCTCTTCAATCGAACCAGGAGGGGTAGCTCCTACACAAACTGAGTTTTCTCTAAACAACATAGAAATGTTTCCCTTGTTTCCTTTTTTCCGATCAAAATCAAGTCGTGTGGTGGAGAACTCTCTATCTGGACCCCTGGTTGGTGATAAAAAAGAGGGCATGCTTGTGTTGAAAAACAAGTCTCCAAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGACGAGTGACGGTTGCCTCGGTTAAAAACTTTCAGCTGGTTGCTTCTGCCGAAAATGGAACTGCTGGACCGGAACATGATAAGATTATCCTGCAATTTGGAAAAGTTGGGAAGGATTTGTTCACAATGGATTATCGATACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1179 0.4419 MAIIRNIFEDMRSRSQRAVAVEKEEKVAVGDGLRQSCWANMPQELLREVLVRIEASEDTWPPRKNVVACAGVCRNWRVITKEIVKKPEISAQITFPISVKQPGPRENLLQCFIKRNRSTQTYYLYLSLTGSLGDDGKFLLAARKCRRPTCTDYIISLDGYDMSRGSNSYVGKLRSNFLGTKFTVYDGQPPHAGAKIAKSHSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSSRVVENSLSGPLVGDKKEGMLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASAENGTAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00837 392 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Trre3g00837 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Trre3g00837 392 PANTHER TUBBY-RELATED 25 390 - -
Trre3g00837 392 FunFam Tubby-like F-box protein 95 392 - -
Trre3g00837 392 SUPERFAMILY Tubby C-terminal domain-like 87 392 IPR025659 -
Trre3g00837 392 CDD F-box_AtTLP-like 38 82 - -
Trre3g00837 392 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Trre3g00837 392 Gene3D Tubby Protein; Chain A 95 392 IPR025659 -
Trre3g00837 392 Pfam Tub family 99 387 IPR000007 -
Trre3g00837 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Trre3g00837 392 Pfam F-box domain 38 87 IPR001810 GO:0005515
Trre3g00837 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00837 Trre-Chr3 5893780 5896484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00837 12 392 TUB Transcription Factor Family AT2G47900 72.063 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre3g00837 Tub 1.3e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00837 K19600 - gmx:100778346 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00837 3 5893780 5896484 Trre3g00837 3 5893780 5896484 ECH