Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00820 ATGGCGAAACCTTCGAAACCACAAGCTTCTTCCGACGAAGCACTCTCGAATTCTTCCAGTTCTTCGGAGGAAGAGCAGGTGAATGATCAGATCAACGAAGAAGAAGATGAAGAGGAGTTGGAAGCTGTAGCTCGTGCTGTTAGTTCGGATGATGATGATGATGAAGTTGTTGGGGATAATCCTCTGGATTCTGATGAAGATGCTGCTGCTGAAGACGGTGACGAAGATGAACAGGGAGGAGATAATGAAGTTCCTGAAATAAGCAAACGTGAGAAGGCAAGATTAAGAGAAATGCAAAAAATGAAGAAACAGAAAGTTCAGGAGATATTGGATGCTCAAAATGCTGCCATTGAAGCCGACATGAACAATAGAGGAAAGGGGCGTTTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCGCATTTTGCAAAGGGTGATCCATCATCATCTCAAAAGAAGTCAAAAGGAAGTGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAAGGAGAAGAAGATGGTGTTGCAAACACTCGTTTGGTGACTCAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTAAACTGGCTCATTCGATTATATGAGAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCACGAGTTCAGAGGAATTAAAGGACCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTTTGCGTGCTGTAAAATTCCTCGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAATCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAACGAGAATTCACTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGAACACCACTTCAGAACAATCTTCATGAACTTTGGTCGCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCAGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACATAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACCATTCTTAAAGTGGGTATGTCACAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGCGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAACTACGGAAGTGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACCAATGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCGTGGATATCAATATTGTCGCATAGATGGTAATACTGGTGGGGATGACCGTGATGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGGGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGATTGGCCGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAAGCAACTGCAGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATATGACTTTGATGATGATAAGGACGAGAACAAGTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCACCAAGAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGACCCACTAAGCCAAAGGAGCCCCGCATTCCGAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACATACAAAGACTGAGCGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAGCACATCAAAAGAATCAGGTAAAGGACTCAATAGATGTCGATGAACCAGAAGTGGGAGATCAGTTGACTACTGAAGAGATGGAAGAAAAGGAACACCTGCTAGAACAGGGATTTTCATCATGGAGCCGAAAAGATTTTAATACCTTCATCAGGGCCTGTGAGAAATATGGTCGAAATGATATTAAAAGTATTGCTTTGGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATTGAGAGGGGGGAGGCTAGAATTTCTCGGAAGGACGAGATCATGAAAGCTATCGGAAAGAAATTGGACCGCTACAAGAACCCTTGGTTAGAGTTGAAGGTACAATATGGGCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTGCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGTGACACACTCATTCGGTTGGTAGAAAAAGAAAACCAGGAATTTGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAGTATGACTCCGACAAAGCGGACTTTGGCAAGACAGACCGAGAGTCCATCTTCTGCAAAGAAGCGAAAGCAGTTAACTATGGATGATTATGCTAACTCGGGCAAAAGGAGAAAATAA 3216 0.4123 MAKPSKPQASSDEALSNSSSSSEEEQVNDQINEEEDEEELEAVARAVSSDDDDDEVVGDNPLDSDEDAAAEDGDEDEQGGDNEVPEISKREKARLREMQKMKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDPSSSQKKSKGSGRHASKVTEEEEDEEYLKGEEDGVANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNIQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEVGDQLTTEEMEEKEHLLEQGFSSWSRKDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKSMTPTKRTLARQTESPSSAKKRKQLTMDDYANSGKRRK 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00820 1071 MobiDBLite consensus disorder prediction 82 99 - -
Trre3g00820 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 847 901 - -
Trre3g00820 1071 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 760 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Trre3g00820 1071 CDD SF2_C_SNF 498 623 - -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 1019 1071 - -
Trre3g00820 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 374 IPR014001 -
Trre3g00820 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 935 1038 - -
Trre3g00820 1071 Pfam Helicase conserved C-terminal domain 500 612 IPR001650 -
Trre3g00820 1071 Coils Coil 95 115 - -
Trre3g00820 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 418 710 - -
Trre3g00820 1071 ProSiteProfiles SANT domain profile. 846 898 IPR017884 -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 27 41 - -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 1019 1035 - -
Trre3g00820 1071 FunFam Chromatin-remodeling complex ATPase 198 413 - -
Trre3g00820 1071 CDD SANT 850 894 IPR001005 -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 9 26 - -
Trre3g00820 1071 Gene3D iswi atpase 902 934 - -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 143 177 - -
Trre3g00820 1071 Coils Coil 1008 1031 - -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 1049 1071 - -
Trre3g00820 1071 Gene3D - 418 710 IPR027417 -
Trre3g00820 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 695 IPR027417 -
Trre3g00820 1071 Pfam SNF2-related domain 210 477 IPR000330 GO:0005524|GO:0140658
Trre3g00820 1071 Gene3D - 198 413 IPR038718 -
Trre3g00820 1071 Gene3D ISWI, HAND domain 749 846 IPR036306 GO:0003677|GO:0006338|GO:0031491
Trre3g00820 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 749 846 - -
Trre3g00820 1071 Coils Coil 17 41 - -
Trre3g00820 1071 CDD DEXHc_SMARCA1_SMARCA5 194 414 IPR044754 GO:0005524
Trre3g00820 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 653 IPR001650 -
Trre3g00820 1071 Pfam SLIDE 904 1014 IPR015195 GO:0003677|GO:0005634|GO:0006338
Trre3g00820 1071 MobiDBLite consensus disorder prediction 52 81 - -
Trre3g00820 1071 SUPERFAMILY Homeodomain-like 902 1024 IPR009057 -
Trre3g00820 1071 SUPERFAMILY Homeodomain-like 850 900 IPR009057 -
Trre3g00820 1071 SMART helicmild6 528 612 IPR001650 -
Trre3g00820 1071 SMART ultradead3 193 385 IPR014001 -
Trre3g00820 1071 Gene3D - 847 901 - -
Trre3g00820 1071 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 91 1056 - -
Trre3g00820 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 412 IPR027417 -
Trre3g00820 1071 SMART sant 847 896 IPR001005 -
Trre3g00820 1071 SMART sant 949 1010 IPR001005 -
Trre3g00820 1071 Pfam HAND 761 841 IPR015194 GO:0003677|GO:0006338|GO:0031491
Trre3g00820 1071 Gene3D - 935 1038 - -
Trre3g00820 1071 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00820 Trre-Chr3 5774524 5782471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00820 218 639 RAD5 or RAD16-like Gene Family AT1G02670 27.327 6.42e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre3g00820 SNF2_N 1.2e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00820 K11654 - gmx:100809750 1892.86