Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00813 ATGTTTTGTCACTCTCGCAGAGCATTGCTCTGTCCAAACCTCACATTCAAAACTCAAACCCCCTCTTCATTTCTTCATCATCTCCAACATTTTTCCTCTTCCAATCAACAACAATCTTTCAGAGTCAACTACCTCGTTCAAAACCTCGGTTTCTCCCATGAAACAGCTTCAAGACTCTCCAACCAAGTTCATTTCAAAAACTCAAAAAAACCAGACACAATCTTAGCATTTTTCAAATCCTACGGCTTCTCAAATAATCACTTATTTCGTATCATCAAAAGTCGCCCAGATGTTCTCTCTTTCGATCTTAACAAAATCATTCTCCCAAAATTCAATTTCCTTCTCTCAAAAGGTGCTTCAAAATCCGATCTTGTTCACATCATTACAAAAACCCCCGTTATCTTGTGTCAAAGCTTGGAAAATACTATCACCCCATCTTATGATTTTGTCAAAAGATTCTTACTTTCTGATCAATCAACTATTGAATTTCTCAAACATTGTGATCGCATGATTTTTTCTAAAAACCCATTTAAGAATATTCAACTTTTGATTCAAAATGGTGTTCCTGAGTCAAAGATGGTTATTTTGCTACGAAATTGGTATCCTATAGTTGCTGAAAATCCTCTTTTTTTGAATAAGGCTGTGATGGAAGTAAAGGAATTGGGATTTAACCCTAAATCGATGGTTTTCATTGTCGCGTTGCGTGCTAAGGTTAATAGTAAGTCACTTTGGGAAAGGAAGATTGATGTGTTTAAGAAATGGGGTTGGTCTGAAGAGAATGTTGTATCAGCATTTGTGAAACATCCTTGGTGTATGTTGTCATCTGTTGAGAAAATTGAGGAAGTGATGAAGTTTTTTGTCAATGAAATGGGTTGGGATTCTCTTGTGCTTGCTAAGTATCCAGTACTTTTTTTGCATAGTTTGGAGAAAAGGATTATTCCTAGGGCATTTGTTTTGCAATTTCTTGAATCTAAAGGTTTGATTAAGGATGCTAAATTGGCTGAACCTTTCAAAGTTACTGAGAGTGTGTTTTTGAAGAGATATGTGACTTGCTATAAGGAAGAAGCTTCTCAGTTGTTGAAGTTGTATGAAGATAAGAAAAATGTTTCAAATAGGGTTTTGAAAGAAGGTTTGCGTCCGCGACCTGTGAAGCGAAATCAAGGGTTTCTGCTACGTGGTCATGGTCATCAGCTGCATTCAACTGTGTCTGCGATTTAA 1218 0.3654 MFCHSRRALLCPNLTFKTQTPSSFLHHLQHFSSSNQQQSFRVNYLVQNLGFSHETASRLSNQVHFKNSKKPDTILAFFKSYGFSNNHLFRIIKSRPDVLSFDLNKIILPKFNFLLSKGASKSDLVHIITKTPVILCQSLENTITPSYDFVKRFLLSDQSTIEFLKHCDRMIFSKNPFKNIQLLIQNGVPESKMVILLRNWYPIVAENPLFLNKAVMEVKELGFNPKSMVFIVALRAKVNSKSLWERKIDVFKKWGWSEENVVSAFVKHPWCMLSSVEKIEEVMKFFVNEMGWDSLVLAKYPVLFLHSLEKRIIPRAFVLQFLESKGLIKDAKLAEPFKVTESVFLKRYVTCYKEEASQLLKLYEDKKNVSNRVLKEGLRPRPVKRNQGFLLRGHGHQLHSTVSAI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00813 405 Pfam mTERF 75 227 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 Pfam mTERF 220 344 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 Gene3D Transcription termination factor 3, mitochondrial 57 172 IPR038538 -
Trre3g00813 405 Gene3D Transcription termination factor 3, mitochondrial 173 362 IPR038538 -
Trre3g00813 405 PANTHER CGI-12 PROTEIN-RELATED 37 355 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 FunFam Mitochondrial transcription termination factor-like 139 356 - -
Trre3g00813 405 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Trre3g00813 405 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00813 Trre-Chr3 5720126 5721343 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g00813 mTERF 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00813 K15032 - gmx:102663105 386.341