Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00811 ATGTCAACTTCTAGAACCTCAAACACTTCCCTTAAAGGACATAATCATCATCACAATCAAACTCAAATTAATCTATCTCTTCTTAAACGAAACACGTCGGTTTGCACCGAAAAAAGAGGGAGAAGAAAACAAACAGAACCAGGTAAGTTTCTTGGTGTAAGAAGAAGACCTTGGGGTAGATATGCAGCTGAAATTAGAGATCCTAGTACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCTTTTGCTTATGATAAAGCTGCTCTTTCTATCAAAGGTAGCAATGCTAGAACAAATTTCATATATTCTTCTGAATCTGATGAAACCAATCTTGATCACAATGTTCAAAAAACACAACCAACCAATCAAATTGAAGAACAAAATTCTTCTCATTTGAACAATGAAAATCTGTTTTTCTCTAATGATTATAATAACTCAGGATATCTTGAATGCATTGTTCCTGTTAATTGTTTCAAACCAATTTCCAACAACAATTCAAACTATGATCATACTAGCAATACAAATGGTTCAAGTGAACATCAAAATGTTGTTGATTCCATTAGCACAACAAATTACTTCATGCAAGGTCAATCATTTTATGATCACTACACTCCATTCTCTCAAGAATCAATTAACATTAACACAAGTGAAAGTAATGAAGGATTATCATGGGATTGCAACTACAATGAACTTTCAGCTATTTTTAACAAACCATTAAGGAGTGAAAGTTCAAACTATGGACTAATGACAAGTCATGATGTTTCTTCAACTACGTATTCTTCTGCATCATATTCTTCGTTTGGCGATGTTGACATGGGATACTCACTCTTCTGA 849 0.3369 MSTSRTSNTSLKGHNHHHNQTQINLSLLKRNTSVCTEKRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAFAYDKAALSIKGSNARTNFIYSSESDETNLDHNVQKTQPTNQIEEQNSSHLNNENLFFSNDYNNSGYLECIVPVNCFKPISNNNSNYDHTSNTNGSSEHQNVVDSISTTNYFMQGQSFYDHYTPFSQESININTSESNEGLSWDCNYNELSAIFNKPLRSESSNYGLMTSHDVSSTTYSSASYSSFGDVDMGYSLF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00811 282 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Trre3g00811 282 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 FunFam ethylene-responsive transcription factor RAP2-11 48 107 - -
Trre3g00811 282 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 187 - -
Trre3g00811 282 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Trre3g00811 282 MobiDBLite consensus disorder prediction 1 24 - -
Trre3g00811 282 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00811 Trre-Chr3 5691495 5692343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00811 20 116 AP2-EREBP Transcription Factor Family AT5G18560 64.762 8.85e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g00811 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00811 - - mtr:11443354 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04786 15 58255924 58256925 Trre3g00811 3 5691495 5692343 PCT