Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00810 ATGGAGCACTATCCTCGCTCCACTCAACCTGATCCGTCACCTGAATGGACCGGACCCGATTCTCAAACCGCTCTCGAAGAACCTATGTGGCAATTGGGGTTAGGTTCTTCTGCTGCTGGTGGTGGTGGTGAAGATTCGTATCCACTTAGACCTGATGAGATTGATTGTACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGCGGCGCGGTTATTGGAGCTGCTGCTAGGACTGCTGGAGAGTATCCTGAACGCGTTGGCCAGCCGGTTTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCGTCTTGTAAGTACCATCATCCTAGACAGACTGGAGCAACTGATGCTACTCCTGTTTCACTAAATTATTATGGATATCCATTACGTCCGGGTGAAAAAGAATGTTCGTATTTTGTGAAAACGGGACAGTGCAAGTTTGGTGCTACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTCCAAATTCCAGCTCCATCGCCAGTTCCTCCAGTTTCACCTTTACATGTACAAGTACCTTCGCCATTATATCCAACAGTACAGCCTCCATCTGGTCCTTCTTCGCAACAAATTGGTGTACTGGTCGCAAGGCCACCTCTACTACCTGGTTCGTATGTCCAGGGCCCTTATGGACCTGTGGTATTGTCCCCAACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGCCACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCGGCTAATGTTGGTTCCACACAGCTTTATGGCATAACTCACATACCTTCATCAGGTAATGCCTATACTGGACCTTATCAACCTTCTGTTTCCTCGGTTGGTCCTTCAAGCAGAAACCAGAAGGAGCAGTCATTTCAAGCAAGGCCTAATCAACCAGAGTATCATTACTACTCTAAACCAGAAGATCTTCCATTTGGTCCATCATATAGCTATCACCAACAACCAGACACGAGTGCACCAAAAGCAAATGTTGTCCTTAGTCCTGCAGGTCTTCCTTTACGCCCGGGAGCAGCACTTTGCACTCATTTCGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGTAAATTTGATCATCCTATCACATCACTGAGTTACAGTCCATCTGCATCTTCCCTAACAGATGCGCCAGTTGCACCCTACTTTGTGACTTCATCTGTTGGTACTCTCGCTCCTTCATCTTATTCACCAGAGTTACAGCCCGAACCTACCGCAGAATCCAGCAGGGAGTCTGTTCCATCCAGAATACCTTCATCAGTGAGCACATCAACCGGTGGTCCTGTTTCTCAATCAAGCACTCGGAGTTCTAGTCCTTTAGCACCTGCCAACACCACAACAAGTAACAATGTCTCTCAAACCTCAAGCTAA 1431 0.471 MEHYPRSTQPDPSPEWTGPDSQTALEEPMWQLGLGSSAAGGGGEDSYPLRPDEIDCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAAARTAGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPRQTGATDATPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPPVSPLHVQVPSPLYPTVQPPSGPSSQQIGVLVARPPLLPGSYVQGPYGPVVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITHIPSSGNAYTGPYQPSVSSVGPSSRNQKEQSFQARPNQPEYHYYSKPEDLPFGPSYSYHQQPDTSAPKANVVLSPAGLPLRPGAALCTHFAQRGICKFGPACKFDHPITSLSYSPSASSLTDAPVAPYFVTSSVGTLAPSSYSPELQPEPTAESSRESVPSRIPSSVSTSTGGPVSQSSTRSSSPLAPANTTTSNNVSQTSS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00810 476 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Trre3g00810 476 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Trre3g00810 476 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g00810 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 123 IPR000571 GO:0046872
Trre3g00810 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 77 IPR000571 GO:0046872
Trre3g00810 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 169 IPR000571 GO:0046872
Trre3g00810 476 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 381 IPR000571 GO:0046872
Trre3g00810 476 PANTHER PROTEIN PHOSPHATASE RELATED 18 413 - -
Trre3g00810 476 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Trre3g00810 476 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Trre3g00810 476 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Trre3g00810 476 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Trre3g00810 476 MobiDBLite consensus disorder prediction 282 314 - -
Trre3g00810 476 MobiDBLite consensus disorder prediction 413 476 - -
Trre3g00810 476 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Trre3g00810 476 Gene3D - 49 125 - -
Trre3g00810 476 Gene3D - 355 410 - -
Trre3g00810 476 MobiDBLite consensus disorder prediction 282 312 - -
Trre3g00810 476 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Trre3g00810 476 Gene3D - 126 178 - -
Trre3g00810 476 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Trre3g00810 476 SUPERFAMILY CCCH zinc finger 358 385 IPR036855 GO:0046872
Trre3g00810 476 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Trre3g00810 476 SUPERFAMILY CCCH zinc finger 53 78 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00810 Trre-Chr3 5686348 5689915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00810 1 447 C2H2 Transcription Factor Family AT5G18550 52.838 6.50e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre3g00810 zf-CCCH 7.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00810 - - gmx:100812433 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00810 3 5686348 5689915 Trre3g00810 3 5686348 5689915 ECH
Trre15g04787 15 58261067 58264516 Trre3g00810 3 5686348 5689915 PCT