Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00800 ATGTCATTTTTGAGTGTCAAAAACTTCTTCCAGAGGTTCTGGTTGGATGAAATGGAGATGGGAAGTTATACACATAGCAGCTTTTTATCTAGTGATCATCTACCGTCTCTTGGCGCCCATGTAAACCTCGAAACTAAACCACGAAAATACTTAATCTACCCATTCAATCCTCATTATAGGGCTTGGGAGTTGTTACTGGTTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACTTATAAGGAAGATGGACTATTCATCTTAGACAACATTGTCAATGGCTTCTTCGCCATCGACATAGTGCTTACATTCTTCGTTGCATACCATGATAAGGATTCTTATCTTCTCATTGATGATCCAAAGAAAATTGCAATCAGGTACATATCGACCTGGTTTGCTTTGGATATTTGCTCAACAGCCCCACTTGAGTCTATTAGCCTCCTCTTCATTAATCATAACAGTGAGCTTGGTTTCAAAGTTCTTAACATGTTGCGACTATGGCGTCTTAACCGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTATTTCTGGGTTAGATGCACAAAGCTCTTTGCTGTAACCTTGTTTGCAGTGCACTGTGCGGGATGCTTTAACTATCTAATTGCAGATGTGTATCCTGATTCCAGAAAAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTAACTTCGATATACTGGTCCATCGTCACGCTTACTACAACTGGCTACGGAGATTTACATGCAGAGAACACCATAGAGATGCTGTTCGATATCACTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTTCATTGGACGAGCCGCACCCAAGATTTTCGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACATCGCGTGCACAATCAAATGTTGGCGCACATATGTTTGAGGTTTAAAACAGAAGGAATGAAGCAGCAAGAAACGTTAAATGATCTTCCAAAAGCAATTCGTTCAAGCATCGCACACCATCTCTTTTTTCCTGTTGTGCAGAAGGTCTACCTCTTTCAAGGTGTCTCCCACGACTTCCTACTCCAATTGGTTTCAGAGATGAAAGCCGAGTATTTCCCGCCAAAGGAAGATGTGATACTGCAAAATGAATCTCCTACAGATCTTTATGTGCTGGTTTCGGGAGCAGTGAATCTCGTTCACTACATTGATGGGAAAGATCAAGTGGTTCTTGACAAGGCAACTGCAGTAGATATCTTTGGAGAGTTTGGAGTTTTATATCATGTACCGCAGCCTTTCACAGTTCGAACCACAGAGCTTTCTCAGATATTAAGACTCAACAGTACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGATTCACAGATTGTAATGGATAACCTTTCAATGAGGTTAAGGGAGCGTGAAGGGTTCGTCTCTGAATATCCACACACAGATCTTGGATTGGTTCTACAGAAACTGCTTCATGGAGTTCCAAATAACATGATACCTGAAGACGGCAAAAGAGATCTCCATGCCGCTACACTGACTGCGCATAAGGGGAAACTGGACATTGTTGAAATTCTGCTTGAAAGAGATGCAAAAGCACATAACACAAATGCCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTACCAAACAAGAGCTTTTCTGACCATACAATGAATTACGAAAGTGAGAAGAATTCAGATGAACATAGAATAGAGATTGTGGAGCCACAAATCCTTAAACTTGGAAGGAATGGCTCAACCAGAAACAGTAGACAGGATGATGTTAGAACTATTAACTTCCCAGTAGAGAAAGTATACACAGACGCCAATTCAAGGAATTCCAATTGTCCAGGTGAAATAGAAATGGCATGGTTCACCAAGAAGAGGGTAACAATCCATTCGCTAAGTGAATGGAGAAGTAGCTCACATGGACAACACGGAAAACTGATTATTCTACCTGACTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAACCCCACAAAAGTAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTCGAGATGGTGATCATCTCTTTTTTCTTGGAAGCGAAAGAATTTGA 2205 0.4059 MSFLSVKNFFQRFWLDEMEMGSYTHSSFLSSDHLPSLGAHVNLETKPRKYLIYPFNPHYRAWELLLVVLVIYSAWICPFEFAFLTYKEDGLFILDNIVNGFFAIDIVLTFFVAYHDKDSYLLIDDPKKIAIRYISTWFALDICSTAPLESISLLFINHNSELGFKVLNMLRLWRLNRVSSLFARLEKDIRFNYFWVRCTKLFAVTLFAVHCAGCFNYLIADVYPDSRKTWIGAMYPNFKEESLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTSYIIGNMTNLVVHWTSRTQDFRDTVKAASEFASRNHLPHRVHNQMLAHICLRFKTEGMKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLLQLVSEMKAEYFPPKEDVILQNESPTDLYVLVSGAVNLVHYIDGKDQVVLDKATAVDIFGEFGVLYHVPQPFTVRTTELSQILRLNSTSLMNVLQANPGDSQIVMDNLSMRLREREGFVSEYPHTDLGLVLQKLLHGVPNNMIPEDGKRDLHAATLTAHKGKLDIVEILLERDAKAHNTNAIGWTQKALVQQLPNKSFSDHTMNYESEKNSDEHRIEIVEPQILKLGRNGSTRNSRQDDVRTINFPVEKVYTDANSRNSNCPGEIEMAWFTKKRVTIHSLSEWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNPTKVINKENAEIDDIDVIRDGDHLFFLGSERI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00800 734 Gene3D Jelly Rolls 370 508 IPR014710 -
Trre3g00800 734 FunFam Potassium channel KAT3 61 301 - -
Trre3g00800 734 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00800 734 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00800 734 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00800 734 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00800 734 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00800 734 SUPERFAMILY cAMP-binding domain-like 304 499 IPR018490 -
Trre3g00800 734 Coils Coil 732 734 - -
Trre3g00800 734 Pfam Cyclic nucleotide-binding domain 397 482 IPR000595 -
Trre3g00800 734 Pfam Ion transport protein 60 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre3g00800 734 SMART cnmp_10 377 495 IPR000595 -
Trre3g00800 734 FunFam Potassium channel KAT2 365 502 - -
Trre3g00800 734 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Trre3g00800 734 Gene3D - 60 300 - -
Trre3g00800 734 Gene3D Helix hairpin bin 301 367 - -
Trre3g00800 734 ProSiteProfiles cAMP/cGMP binding motif profile. 377 497 IPR000595 -
Trre3g00800 734 Pfam KHA, dimerisation domain of potassium ion channel 659 728 IPR021789 -
Trre3g00800 734 CDD CAP_ED 377 491 IPR000595 -
Trre3g00800 734 ProSiteProfiles KHA domain profile. 660 734 IPR021789 -
Trre3g00800 734 PANTHER POTASSIUM CHANNEL AKT1 25 502 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00800 Trre-Chr3 5577501 5581253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00800 1 728 Ion Channels AT5G46240 57.279 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00800 K21867 - gmx:100811356 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00800 3 5577501 5581253 Trre3g00800 3 5577501 5581253 ECH