Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00779 ATGAGGAGGAGAAATTGTAACTTGGAACTTTCACTTTTTCCTATCTACAATTCTACCAATCACCCCATGGTAAAAGAAGAAGAAGAAGATAGTGAAGAGAATCAGCAACATGCGCCGCTCACTATTTTCTATGATGGCAAGATGTGTGTTACTACTGATGTTACCGAGTTTCAGGCCAAATCCATCTTAATGCTAGCAAATAAAAAAGTACAAGAAAAAGTGAAGACACCAACAGGGTCAGTACCAACAACACCAACAATTGTACAATCTCCTCATAATCAATTGTATAGTCCTGGGCCTGGTCTTTCAATGAAGAGATCTTTGCAACGTTTTCTACAGAAGAGAAAGGATCGAATCCAAGAAGCATCTCCATATAATCACTAG 384 0.3854 MRRRNCNLELSLFPIYNSTNHPMVKEEEEDSEENQQHAPLTIFYDGKMCVTTDVTEFQAKSILMLANKKVQEKVKTPTGSVPTTPTIVQSPHNQLYSPGPGLSMKRSLQRFLQKRKDRIQEASPYNH 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00779 127 Pfam tify domain 35 67 IPR010399 -
Trre3g00779 127 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 126 IPR040390 -
Trre3g00779 127 MobiDBLite consensus disorder prediction 73 97 - -
Trre3g00779 127 MobiDBLite consensus disorder prediction 72 103 - -
Trre3g00779 127 SMART tify_2 33 68 IPR010399 -
Trre3g00779 127 ProSiteProfiles Tify domain profile. 33 68 IPR010399 -
Trre3g00779 127 Pfam Jas motif 105 125 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00779 Trre-Chr3 5406763 5408820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00779 3 125 Tify Gene Family AT1G30135 43.750 3.31e-27 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre3g00779 tify 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00779 - - gmx:100803886 158.688