Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00773 ATGGCGGGAATCAACGATGCAATGAAATCCAACACTAAAAAGAGAAAAATTGGTGAAATCAAGAAAGTGAAAAAGTTGAACGAGTCTGAAATGTTCTCAAAACGTAAAATTAGTCTTTTCAACAAAGTAACAGAGCTTTCTGTTTTGTGCAAAGCAAAAACCGCACTCATTATCACATCACCTCACAAGGAACTCTATGCATGTGGCTATCCTAATTGCGACGCAGTCATTCAACAATTTTTGACGGGAAAAGACACCGTGGAAGACAGTGAGAAAAAGAAGCAAGATGAGATTGTTGAAAACCTAAGGCTTGAATACGAGGCAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTGAAAGCTATGGTTGATGCGAAAGATAAGAGTGATTCTATTTTTCCTTGTTGGTGGGATGATTCTATTGATGATATGGATTTAGAGTCTCTTGAAGAAATTAAGTCTTCTTTACAAAATTTGAGACTTAATTTAGGTTCCGCTATTGACCAAAAGAAGTTAATGTTTGCATCCAATGCCTAA 540 0.3556 MAGINDAMKSNTKKRKIGEIKKVKKLNESEMFSKRKISLFNKVTELSVLCKAKTALIITSPHKELYACGYPNCDAVIQQFLTGKDTVEDSEKKKQDEIVENLRLEYEAIEDKLKEEEKNLKAMVDAKDKSDSIFPCWWDDSIDDMDLESLEEIKSSLQNLRLNLGSAIDQKKLMFASNA 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00773 179 Coils Coil 92 126 - -
Trre3g00773 179 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Trre3g00773 179 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Trre3g00773 179 SUPERFAMILY SRF-like 14 82 IPR036879 GO:0003677|GO:0046983
Trre3g00773 179 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Trre3g00773 179 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Trre3g00773 179 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Trre3g00773 179 Gene3D - 26 109 IPR036879 GO:0003677|GO:0046983
Trre3g00773 179 Coils Coil 150 170 - -
Trre3g00773 179 PANTHER MADS BOX PROTEIN 15 164 - -
Trre3g00773 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00773 Trre-Chr3 5374020 5374559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00773 20 161 Type I MADS-box Gene Family AT5G60440 30.464 2.83e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre3g00773 SRF-TF 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00773 - - tpra:123896833 216.468