Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00771 ATGAGTTTGAGTGTTCCTAATCGTAATTTGTTTTCTAACATTGAAGAAATTAACTCTGATAGAACAACTTGGAATATTAGGGCTAAGATCATAAGACTTTGGCAAGTCTCTGATTTTAATAGAGCTAATGTTCCTTTTTCCCTTGAAATGGTTTTAATGGATGCTGCTGGTGATAAGATTCATGCCACCATAAAAAAAACACTGATTTACAAATTTAAAAATGATTTAATTGAAGGAAAAGTCTATTGCTTTGAGAATATGGGTGTTGCAACTAATTCTGGAGCTTATCGTTCCAATCGCCACCCTTACAAGCTTAATTTTCAGTATGGCTCTTTGGTTCAAAGGCTTTCAAATTTTGAGATTTTGAAATCTCCATATAATTTTGTTCCAATTTCTGAAATTGTGGGTGGTAGTTATGACTGTGATTATTTAGTTGATGTTATTGGGTTGTTTACTGGTTATGGTCAAGAGCGTGAGGTGACTAATCAAAATGGAACCACAACCAAGCTGAATGTCATTGTTTTGGAAGCTGATGGGCATAAGCTTCAGTGTACTTTATTTGGACCATATGTTGATGAACTCAATGCCTTTATTGCTGCTGGTGATCTTACTAATGCTGTGGTGATTTTTCAACTTGCAAAGGCTAAAAGTTTCCAAGACAAGATGCATATTCAGAATTGCATGAACTGTTCTGTTTTGAAGTTTAACCCAAGCTGTCCAGAAAGTGTTAACTTTAGATCAAGTCTCACTGATGGTGTGGAGACACCTTCTCCATTGACCTTGACTCAACTTTCTGTTGAATCAAGGGTTGAACCTGTTGATGATTTTTTGTACAACACTCCAAGGATGACCTTGCAAGCACTCAAAGATGCTACAAATGAATCAGTGAATGTTGTTCTTGCTACTATTAAGAAGATTTTAAATCCGGATGCTTATTGGTACACTGCATGTGTATGTAGCAAGGCTGTCATACCAGATTCTAGGATGTTCTATTGTGAGAAATGTAACAAGCATGTGCATAGGGTTGTACCTAGGTTTTGTATCAAAGTGAGAGTGATGGATCATACTGAATCAGCAAACTTTGTCATTTTTGACACTCAAGCAAGTGCTCTATTCAATAGGTCTTGTGCTGATATGATCCAAGGAGCTGAACCTGGGGTTGGTAATGGAGTTGTGCCTAATGAGATTGAAAATTTGGTTGGTAAAAGTTGGTTGTTTAAGGTTGAGGCAAAACCTTCTCATAATCCAAAGTTTGAGCAGTCTTTCCGTGTTAGGAAGATTTGCACCGATGATGGCATCATTAAGCAGTTTTCAGACAAGTGGGAACAAGAAGAGGCTGTGTTGATGAAAAATAACAATGAGGTTGGTTCTTTGAGTACTCTAATGACAAAAGGGAAGGATGTTTTGGTGTGTGGATCTTCAAATGTGTTATGTGAGGATTCTCTCTCTTTATCTGAAATTTCTATGAAAGGAAAGGAGGTTGTTTTAGAAGGAGCACCCATTGGAGTGTCTCAAGATTTGTTGACAAAGTTCTCTAATGCAGTGGTTAATCTTGGTGATGATTCTGTTGATGTGGTGTGTGAGCAAGAGGTTGTTGAAGGTTTTGTGGAGAATGTGAAGGCTGCTGTTGTCAAAGATGTTGAAACTCCTGCTGCTGTTAAACCAATGGGGCAGCGTAAGAAAACAGTTGCCAAGAGAATTTCACCTCAGCAAATGGATCAAGAAGATGAACATGCTCCTATCAAGTTGTTGAAGAGGGCTGTGAAAATTGAAAAACTTCCATAG 1785 0.3776 MSLSVPNRNLFSNIEEINSDRTTWNIRAKIIRLWQVSDFNRANVPFSLEMVLMDAAGDKIHATIKKTLIYKFKNDLIEGKVYCFENMGVATNSGAYRSNRHPYKLNFQYGSLVQRLSNFEILKSPYNFVPISEIVGGSYDCDYLVDVIGLFTGYGQEREVTNQNGTTTKLNVIVLEADGHKLQCTLFGPYVDELNAFIAAGDLTNAVVIFQLAKAKSFQDKMHIQNCMNCSVLKFNPSCPESVNFRSSLTDGVETPSPLTLTQLSVESRVEPVDDFLYNTPRMTLQALKDATNESVNVVLATIKKILNPDAYWYTACVCSKAVIPDSRMFYCEKCNKHVHRVVPRFCIKVRVMDHTESANFVIFDTQASALFNRSCADMIQGAEPGVGNGVVPNEIENLVGKSWLFKVEAKPSHNPKFEQSFRVRKICTDDGIIKQFSDKWEQEEAVLMKNNNEVGSLSTLMTKGKDVLVCGSSNVLCEDSLSLSEISMKGKEVVLEGAPIGVSQDLLTKFSNAVVNLGDDSVDVVCEQEVVEGFVENVKAAVVKDVETPAAVKPMGQRKKTVAKRISPQQMDQEDEHAPIKLLKRAVKIEKLP 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00771 594 CDD RPA1_DBD_B_like 146 241 - -
Trre3g00771 594 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre3g00771 594 Gene3D - 11 118 IPR012340 -
Trre3g00771 594 Pfam Replication factor-A C terminal domain 300 413 IPR013955 -
Trre3g00771 594 CDD RPA1_DBD_C 299 427 IPR047192 -
Trre3g00771 594 CDD RPA1_DBD_A_like 26 113 - -
Trre3g00771 594 Gene3D - 120 255 IPR012340 -
Trre3g00771 594 Gene3D - 277 431 IPR012340 -
Trre3g00771 594 PANTHER OS03G0429900 PROTEIN 13 413 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g00771 594 SUPERFAMILY Nucleic acid-binding proteins 281 429 IPR012340 -
Trre3g00771 594 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre3g00771 594 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
Trre3g00771 594 MobiDBLite consensus disorder prediction 557 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00771 Trre-Chr3 5367665 5370239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00771 14 356 Core DNA Replication Machinery Family AT2G06510 21.330 2.28e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00771 - - tpra:123915358 810.061