Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00758 ATGGGTGATAATAATTCAGCTAGCAATGGAAACCTTGATGTGGTTTTGAATGTTAACGATGATGCCACTAAAAAGTGTGAAGACTTAACCAATCAAGATTGTGTGCCTCTTTTACAAAAGTTGGTAGCAGAGGTGGTGGGAACATTCTTCTTGATATTTGTTGGATGTGGTTCTGTGGTGACAAACCTTAACAATGATAAAATAGTAACGCTTCCAGGAATTGCAATTGTTTGGGGACTTGCTGTTATGATACCAACTTATTTAATTGCTCAACTCCTTGGATCAACACTTGCAAGTGCAGCTCTTAAACTTATATTTAGTGGCAAAGAAAATCAGTTTGTAGGAACTCTTGCAGCTGGTTCTGATCTCCAAGCCTTTGTGGTTGAATTTATAATCACTTTCAACCTTATGTTTATAATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAACTGGCTGGACTTGCAGTTGGATCTACAGTTACATTAAATGTGTTGTTTGCCGGGCCAATTACAGGAGCATCAATGAATCCAGCAAGAAGTTTAGGGCCAGCTATTGTGCACCTTGAATTTAAAGGAATATGGATATATTTAGTGTCACCTATTTTAGGAGCATTGGCTGGTACATGGGCATATACTTTCATTAGATACACAAACAAGCCGGTACGTGAGATTACCAAGAGTGCTTCATTCCTCAAAGGTTCAAGAAGCAAGTGA 720 0.3875 MGDNNSASNGNLDVVLNVNDDATKKCEDLTNQDCVPLLQKLVAEVVGTFFLIFVGCGSVVTNLNNDKIVTLPGIAIVWGLAVMIPTYLIAQLLGSTLASAALKLIFSGKENQFVGTLAAGSDLQAFVVEFIITFNLMFIISGVATDNRAIGELAGLAVGSTVTLNVLFAGPITGASMNPARSLGPAIVHLEFKGIWIYLVSPILGALAGTWAYTFIRYTNKPVREITKSASFLKGSRSK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00758 239 PANTHER AQUAPORIN NIP2-1 26 87 IPR034294 -
Trre3g00758 239 PRINTS Major intrinsic protein family signature 128 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00758 239 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00758 239 PRINTS Major intrinsic protein family signature 196 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00758 239 PRINTS Major intrinsic protein family signature 159 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00758 239 SUPERFAMILY Aquaporin-like 35 227 IPR023271 -
Trre3g00758 239 Gene3D Glycerol uptake facilitator protein. 85 229 IPR023271 -
Trre3g00758 239 Gene3D Glycerol uptake facilitator protein. 3 84 IPR023271 -
Trre3g00758 239 Coils Coil 12 32 - -
Trre3g00758 239 Pfam Major intrinsic protein 85 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00758 Trre-Chr3 5295564 5298970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00758 17 239 Major Intrinsic Protein MIP AT5G37810 44.565 9.58e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00758 K09874 - gmx:100786924 356.681