Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00752 ATGATGTTACAACAACAACCCTTTTCATTTTCATCTTCATCTTCATCTTGTTCCTTTTCATATTTCACATACCAACCATTTTTTCCACTTCAAATCAAATCAAAATCTTTTCAATTTTTCACCACCACACATCTTCCTCATCTTATCATCCATCATCATCACTACCCATCACCATGTTCTCTTCATTTCAATGATTTCATCATCACCAACACTTCCAATAATTCATCAACCTCTTTTGCAGTCTCATACCTCATCAACACTTTTGACCTTTCCCCAGAACTTGCTTCCAAACTCTGCTCCACTTACAATCTTCGTTTCAAAACTGCACAAAACCCTGATTTAGTTCTCAACTTTTTTAGAAACAATGGTTTCTCAGAAACCCAATTACGTTCTATCATTCCCAAAGCACCATGGCTTCTTTTATGCAACCCCTTCACAAGGGTCATTCCAAAGTTTGAATTTTTTCTATCCAAAGGTGCATCTAAATTTGACATTGTTAAACTTGTCACCAAGGACCCTAATGTACTTTCTCCAAGTTTGGAGGATCATATAGTCCCAACCTATAAATTGTTGTATAGATTTTTGCAATCGGACAACGAAACTATTGCTCGCGCGTTTCAAAATCCGTATTTAATTAGTGACTATCGTGTGCCATATAACATTGCATTGTTGGTTGAGAATGGAGTGAAGGACTCAACCATTGTAAGATTGCTTTACAATAGTCCTCGGTCGTTGAATACAAATCGAAATTATATGGTAAAGTTGGTGAAGGAATTGAAGGATATGGGATTTAGTCCTTCAAAAGTAAGCTTTGGTACAGCATTGGAAGCGAAACAATCCGTATATAAAACATTGTGGAACGAGAAAGTTGATGCCTTTAAGAAATGGGGGTGGTCTGATGAAGATGTTATGGAAGCATTTAGAAGGCAACCTCAGTGTATGTTAACATCCATTGATAAAATTAATTTATTGATGAGCTTTTGGGTCGATCAATTGGGTTGGGATGTGCGTGCCCTTGCAAAAAGACCGTCGATTTTTACATATAGTTTGGAAAAAAGGATCATTCCAAGGACCTCAGTAGTGCAATTTCTGTTGAAGAAAGGTTTACGGAAAAAGACTGCAAGCTTAACTTGTCCTATTATTGTGTCCGAGGAGTTGTTTCTTGATACGTTTATAAAACGTTATAAAGAGGAGTCTTCTTATCTATTAAAGATTTTTTTCGGGTACTATGCTTGTAGTTGTAGCTTTGCTCTGGCCAATCATTCAAAAGTTAATCAAATCAAATTTTCACTCTTGTTAGACATCGATTTAGCAGCATAA 1320 0.3629 MMLQQQPFSFSSSSSSCSFSYFTYQPFFPLQIKSKSFQFFTTTHLPHLIIHHHHYPSPCSLHFNDFIITNTSNNSSTSFAVSYLINTFDLSPELASKLCSTYNLRFKTAQNPDLVLNFFRNNGFSETQLRSIIPKAPWLLLCNPFTRVIPKFEFFLSKGASKFDIVKLVTKDPNVLSPSLEDHIVPTYKLLYRFLQSDNETIARAFQNPYLISDYRVPYNIALLVENGVKDSTIVRLLYNSPRSLNTNRNYMVKLVKELKDMGFSPSKVSFGTALEAKQSVYKTLWNEKVDAFKKWGWSDEDVMEAFRRQPQCMLTSIDKINLLMSFWVDQLGWDVRALAKRPSIFTYSLEKRIIPRTSVVQFLLKKGLRKKTASLTCPIIVSEELFLDTFIKRYKEESSYLLKIFFGYYACSCSFALANHSKVNQIKFSLLLDIDLAA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00752 439 Pfam mTERF 287 387 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 Pfam mTERF 116 269 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 Gene3D Transcription termination factor 3, mitochondrial 216 405 IPR038538 -
Trre3g00752 439 Gene3D Transcription termination factor 3, mitochondrial 94 215 IPR038538 -
Trre3g00752 439 PANTHER CGI-12 PROTEIN-RELATED 75 398 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 SMART mt_12 336 370 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 SMART mt_12 304 335 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 SMART mt_12 166 197 IPR003690 GO:0003690|GO:0006355
Trre3g00752 439 FunFam Mitochondrial transcription termination factor-like 180 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00752 Trre-Chr3 5227146 5229619 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre3g00752 mTERF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00752 K15032 - mtr:25488156 433.335