Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00746 ATGGAAGATCTTGAAAGAATGGGTAGAGAACTCAAATGTCCAATCTGTTTGAGTTTAATTCATTCCGCTGTTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATAATTAAGTCTATGAAATCTGCATCTTCTTGTCCTGTTTGTAAAATACCCTTCGCTCGTCGAGAGGTTCGTCTTGCTCCTCAAATCGACAGTTTGGTCACTATCTACAAAAACATGGAAGCTGCTTCTGGAATCAATTTATTTGGAACTCAAAATCCACCTGCTACCAAATCACTAGATGAGGATAAGCAATGTGAAGATGATTCTAAGTCTGGTGAGAAGGGAACTGTTGGGGATCATGAAAATCATCCCGAGGAGGAAAAAACCCCCAAGAGAAAGAAGTTGGCTAAGAAGCTTAAGGCCGACACAAAAACTTCGGCTTCTAACCGTGCAAAGCCTTCTTTTCCGGCTAAGAAAAGGGTTCAGGTGCCACAAGATATTCTTTCAGAAACTCCAATGAGGAATTTGAAGACAGGAGGCACTGTTAGTCTAATTAACAAAGAGGGAACACAAAATGAAAAAGGTGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAGAAGGATGGTGAAATGTTAAGTCAACGCAGCGATGAAGATCTAATTATTGAGGGTTCTACACCAGTTCCACCTTCATTCAGTGATCTCAAAGATGCTGATGATGAAAGCCCTTCAAAACAAGCAGACGAGGTGCAAAATAAACCATCTTTTGATTTATTTGATAGTGAGATGTTTGAATGGACGCAAAAGCCATGCTCACCTGAATTGTTTTCAAGTCCCATTAAAATGCAGGTTGAGGATACTTTTGAGAATGGTGAAAATATAGAGGAATTAATGGCAGGGACTCAAGAGCATCATCTAAGTGCTGATGCTTACAATATAAACTTTGAGAATCCCACAGACAATCAATTGGCTGATGTGTTGCCACAAGGTGTGTCCTCTCAAATTAGAAGTTTGGATGATCTAAATGGAAAAAAGAAGGCTACAAAGAGAAGCAGGAAGGCTAGAGGAAAATCTATGGAAGACAAGATTAGGGAACAAAAATGTCAAAATGATGAAATGAATTTGGATTCAAATATAAAATCAAAAGATATTGAGGATCAATCATTGGACAACAAGCACAGAGCTTCTAATCTGAAAAAGTCTAATAAAAAGGGCAAGAAGGTTTCTTTCATTACCAGTACAGATTCAACACCACAAACTGCTTGTACAGTCTCCAATATATCAGGAGTTCGAAGCAATGGTAGAAGAATGGCAGCTAAGAATTCATATACATCTGCATCAAAACAAGATAATGAGATACAATGTTCTCAGAAGATTGTTGGAAAAAGTCAGGTGCGAAGATCTGGAAAACAAAGGCTGGATGTTGTGCATGAACCACCTGAAGATTTAACTTCAGTGCAAAATCAATGCGAAGAGCTTGCTGGATCTGCTTCATCTACTTTAGGTCTGCAGATGGATAATAATAGGAAGGATGCTAATACTGGGAAAAGAAAAAGCAGTCTGTCAAGAAATTCTATGCCTTGCAGTAAAGAAAGGAAGAGTACTAAAAAGTCAAAAATTTCTCCTGAATTTATCTCTAGGACTAAAAATGATGAAGAAATTAAGTCGAAGGAAAGTATTAAGCAAGGTACTGATGCCAGGCCTTTGAATGATTCTTCAAAAGAGAAACAGTGTCATTTGACGGATCAACCAGTTTTAAGGAAATGTGTGAACCATGTCAAGGATTATCAATGTGTTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGCCCGATGGTGCACTATTTTGATGGCAAGCCCGTAACTGCTGATTATGAAGGAGGATCTAAAGTCATACATTGTCACAGGAATTGCACTGAATGGGCCCCAAATGTATATTTTGAAGATGATAATGCAATAAACCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAGTTTCTGTGGACTTAAAGGAGCTGCACTCGGTTGCTTTGAGAAAAGTTGTCGAAGGAGCTTCCATGTTCCCTGCGCCAAGTGGACTCCCGAATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTGCATGCATCCTCCATGTTGCCGTATGAAAGTTCAGGATCCCAACACAGAAGCAAGACACTCACTGCTAGTAAGGGTAAAAGCTGTAGCCGCAAACATGACACTGCAAGCCAAAGTCGTGTTACTCATGGATCTCACAAAAAAATTGTACTGTGTTGTTCAGCTCTATCTGTAGAGGAGAGGGATGTTGTTTCTGAATTTGAAAGAGTGTCCAAGGTTACAGTTTTGAAAACTTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAAATGAAAATGGGGCATGCAGAAGGACTCTCAAAGTATTGTTGGGTATTCTAGAAGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAGGACCTGTTGACGAGGAGCGTTATGAAGTTAATGTTGACATCCATGGAATTAGGGATGGTCCCCGTCTTGGACGACAAAGAGCATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGAGATTTTATCCCGTCATACAAGGGTTATTTGCAAGACCTTGTGATTGCAGCTGGAGGGACAATTCTGCATAGAAAACCAGTGTCAGGTGACCATCAAGCAATTCCACCTGATATGCGTCCACACCAAACCCTCATAATCTACAGTCTTGAGCTGTCTGCTAAATGCAATCCTTTGGAAAAGGATGGAATTTTTAGCCAAAGGCGATGTGATGCAGAGGTTTTGGCAAGGCCTACTGGTTCAAAGGTTGCAAGTAACACATGGATTCTGAATTCAATTGCTGGCTGTAAGCTGCAAAGCCTTGCTCAGTGA 2949 0.4008 MEDLERMGRELKCPICLSLIHSAVSLTCNHLFCNSCIIKSMKSASSCPVCKIPFARREVRLAPQIDSLVTIYKNMEAASGINLFGTQNPPATKSLDEDKQCEDDSKSGEKGTVGDHENHPEEEKTPKRKKLAKKLKADTKTSASNRAKPSFPAKKRVQVPQDILSETPMRNLKTGGTVSLINKEGTQNEKGDQVKEPFFWLREEKDGEMLSQRSDEDLIIEGSTPVPPSFSDLKDADDESPSKQADEVQNKPSFDLFDSEMFEWTQKPCSPELFSSPIKMQVEDTFENGENIEELMAGTQEHHLSADAYNINFENPTDNQLADVLPQGVSSQIRSLDDLNGKKKATKRSRKARGKSMEDKIREQKCQNDEMNLDSNIKSKDIEDQSLDNKHRASNLKKSNKKGKKVSFITSTDSTPQTACTVSNISGVRSNGRRMAAKNSYTSASKQDNEIQCSQKIVGKSQVRRSGKQRLDVVHEPPEDLTSVQNQCEELAGSASSTLGLQMDNNRKDANTGKRKSSLSRNSMPCSKERKSTKKSKISPEFISRTKNDEEIKSKESIKQGTDARPLNDSSKEKQCHLTDQPVLRKCVNHVKDYQCVFCLSSEESEASGPMVHYFDGKPVTADYEGGSKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHASSMLPYESSGSQHRSKTLTASKGKSCSRKHDTASQSRVTHGSHKKIVLCCSALSVEERDVVSEFERVSKVTVLKTWDSSVTHVIASTNENGACRRTLKVLLGILEGKWILSIEWIKACMKETGPVDEERYEVNVDIHGIRDGPRLGRQRALNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGTILHRKPVSGDHQAIPPDMRPHQTLIIYSLELSAKCNPLEKDGIFSQRRCDAEVLARPTGSKVASNTWILNSIAGCKLQSLAQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00746 982 SUPERFAMILY RING/U-box 4 73 - -
Trre3g00746 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 715 IPR013083 -
Trre3g00746 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Trre3g00746 982 SMART ring_2 666 712 IPR001841 -
Trre3g00746 982 SMART ring_2 13 50 IPR001841 -
Trre3g00746 982 FunFam Breast cancer associated RING 1 590 715 - -
Trre3g00746 982 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 979 IPR031099 GO:0006281|GO:0006974
Trre3g00746 982 SMART PHD_3 665 713 IPR001965 -
Trre3g00746 982 SUPERFAMILY BRCT domain 870 980 IPR036420 -
Trre3g00746 982 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Trre3g00746 982 CDD BRCT_Bard1_rpt1 759 834 - -
Trre3g00746 982 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Trre3g00746 982 ProSiteProfiles Extended PHD (ePHD) domain profile. 593 713 IPR034732 -
Trre3g00746 982 MobiDBLite consensus disorder prediction 203 251 - -
Trre3g00746 982 Pfam PHD-like zinc-binding domain 634 712 - -
Trre3g00746 982 Gene3D BRCT domain 755 862 IPR036420 -
Trre3g00746 982 SMART BRCT_7 752 835 IPR001357 -
Trre3g00746 982 SMART BRCT_7 868 975 IPR001357 -
Trre3g00746 982 FunFam Breast cancer type 1 susceptibility protein homolog 756 862 - -
Trre3g00746 982 ProSiteProfiles BRCT domain profile. 784 845 IPR001357 -
Trre3g00746 982 MobiDBLite consensus disorder prediction 338 410 - -
Trre3g00746 982 ProSiteProfiles BRCT domain profile. 866 982 IPR001357 -
Trre3g00746 982 Pfam BRCA1 C Terminus (BRCT) domain 784 832 IPR001357 -
Trre3g00746 982 MobiDBLite consensus disorder prediction 456 482 - -
Trre3g00746 982 MobiDBLite consensus disorder prediction 527 575 - -
Trre3g00746 982 Gene3D BRCT domain 867 974 IPR036420 -
Trre3g00746 982 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Trre3g00746 982 MobiDBLite consensus disorder prediction 494 575 - -
Trre3g00746 982 MobiDBLite consensus disorder prediction 95 128 - -
Trre3g00746 982 SUPERFAMILY BRCT domain 759 859 IPR036420 -
Trre3g00746 982 MobiDBLite consensus disorder prediction 83 158 - -
Trre3g00746 982 MobiDBLite consensus disorder prediction 352 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00746 Trre-Chr3 5197041 5202492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00746 6 63 RAD5 or RAD16-like Gene Family AT5G22750 36.667 1.57e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00746 K10683 - gmx:100804958 1288.86