Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00729 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGCGAGTCCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTAGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACTAACAAGGAAGTGGATGCTCATATCCCAAACTATCCGAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCACGCTGACGTGGAGACCGATGAAGTGTACGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGAGGATTCTCCGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGAGATTTGCATGGTAACGAATGGAAGTTCAGACATATCTTCCGAGGTCAACCTAAAAGGCATCTACTTACAACTGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAACGAAAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACCGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACCGGCATTTGTGACCTAGATTCTGTCCGGTGGCCGAACTCGCATTGGCGCTCTGTGAAGGTAGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCATTCCCCCTTAGGCTTAAAAGACCGTGGCCTCCTGGATTGCCTTCGTTCAATGGCATGAAAGATGATAATTTTGGCATGAATTCTCCTTTAATGTGGCTCCGAGACACCGATAGAGGGCTTCCGTCTCTTAATTTTCAAGGGATTGGTCTTAATCCTTGGATGCAACCAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTTGATCCTTCCAAATCCCATTCTGGTTCCTTACTTCAATTTCAGCAACCACAGAACTTTCCGAACCGGACCGCTGCTTTAATGCAGGCACAGATGTTGCAACAGTCGCAATCTCAACAGGCTTTTCAAAATAATAATCCGGACAATCAAAATCTTTCGCAATCTCAGCTACAAACTCAGAGTCATCCTCAGCAGCATCTACAGCATCAGCACTCGTTCAATAATCAACTCCATAATCATAATCAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCAGAACTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCGCCACAACCTCATTCACCACCACCTATGCAAGCTCTCTCTTCACTATGCCATCAGCAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCGTTTCCGCAGGATGAAACATCACAACTTATGAGCCTTCCTAGAACAAGTTCTTGGGTTCCTGTTCAAAATTCAACCGGTTGGCCCTCCAAGCGTGTTGCGGTGGATCCACTCCTTTCTTCGGGAGCATCTCAATGTATGCTGCCTCAGGTGGAGCAGTTAGGGAATCCACAGAATACCGTATCTCAAAATGCTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCACAATTGACCAAGAAGGGAGCAATGATCAGCAAAGTAATCTTTTATTTGGTGTCAATATTGATCCCACGTCTCTTCTAATGCATAACGGGATGTCAAACTTCAAGGGTATTGGTGGCGGCAACAGCGACTCAACCATGCCCTATCATCAATCTTCTAATTACATGAACACCACAGGCACCAATTCTTCGTTGAATCATGGAGTAACACCTAGTATTGGTGAATCCGGTTTCTTGCATACCCCAGAAAACGGGGAGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAGTTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTCGGACTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTCGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTCGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATAGCATCTGTGATGACTATGTGAGCCGTCAAGATTCAAGAAATCTAAGCAGCGGAATAACAACCGTGGGATCTCTAGACTACTGA 2715 0.4622 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMKDDNFGMNSPLMWLRDTDRGLPSLNFQGIGLNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKSHSGSLLQFQQPQNFPNRTAALMQAQMLQQSQSQQAFQNNNPDNQNLSQSQLQTQSHPQQHLQHQHSFNNQLHNHNQQQQQTQQQVVDNQQNSGSVSTMSQFVSAPQPHSPPPMQALSSLCHQQSFSDSNVNSSTTIVSPLHSIMGSFPQDETSQLMSLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGASQCMLPQVEQLGNPQNTVSQNAITLPPFPGRECTIDQEGSNDQQSNLLFGVNIDPTSLLMHNGMSNFKGIGGGNSDSTMPYHQSSNYMNTTGTNSSLNHGVTPSIGESGFLHTPENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00729 904 FunFam Auxin response factor 291 363 - -
Trre3g00729 904 ProSiteProfiles PB1 domain profile. 771 855 IPR000270 GO:0005515
Trre3g00729 904 SUPERFAMILY CAD & PB1 domains 768 846 - -
Trre3g00729 904 FunFam Auxin response factor 766 860 - -
Trre3g00729 904 SMART B3_2 127 229 IPR003340 GO:0003677
Trre3g00729 904 Gene3D - 291 363 - -
Trre3g00729 904 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre3g00729 904 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Trre3g00729 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 860 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre3g00729 904 FunFam Auxin response factor 125 229 - -
Trre3g00729 904 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Trre3g00729 904 MobiDBLite consensus disorder prediction 481 578 - -
Trre3g00729 904 Pfam AUX/IAA family 761 856 IPR033389 -
Trre3g00729 904 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Trre3g00729 904 CDD B3_DNA 126 227 IPR003340 GO:0003677
Trre3g00729 904 Gene3D - 768 860 - -
Trre3g00729 904 Gene3D - 125 228 IPR015300 -
Trre3g00729 904 MobiDBLite consensus disorder prediction 481 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00729 Trre-Chr3 5064383 5069310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00729 1 483 B3 DNA Binding Superfamily AT1G30330 86.270 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre3g00729 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00729 - - gmx:100798719 1492.25