Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00728 ATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCTAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGCAAGGATGTGGTTAAGTTCAAGGTCAGATGTTCCAAGTACCTTTACACACTCTGTGTGTTTGACGTTGAGAAAGCCGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTGTAA 210 0.4333 MPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLCVFDVEKADKLKQSLPPGLSVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00728 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Trre3g00728 69 FunFam 60S ribosomal protein L38 1 69 - -
Trre3g00728 69 Gene3D - 1 69 IPR038464 -
Trre3g00728 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00728 Trre-Chr3 5059996 5061176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00728 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 8.64e-43 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00728 K02923 - thj:104805270 135.191