Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00720 ATGGCAGATAACACTGAGCTACACAATAATTCTTCATCATCTACACAACAACATGAAATCAAAGATAACAAAGCCAATCAAAAAGTTCCATTCTACATGTTATTCAATTTTGCTGATAAAATTGATGTAACGTTGATGATCATTGGCACTATCTCTGCCATGGCTAATGGATTAGCACAACCTCTCATGACACTTATTTTTGGAAAAATTATTAATGCTTTTGGTTCATCTGATCCATCAGATGTTGTTAAACAAGTTTCTAAGGTATCATTGCTGTTTGTTTACCTGGCTGTTGGGTCTGGAATAGCATCGTTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACAATATTAAAACAGGATATTGCATTCTTTGACACTGAAACAAACACAGGAGAAGTAATTGGTAGAATGTCCGGTGACACGATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAATTTGTACAACTTGCTTCAAATTTTTTTGGTGGCTTTGTGATTGCATTTATAAAAGGATGGCGCCTAGCTATAGTTTTAATCGCATGTATGCCTTGTGTTATTATTGCCGGCGGTTTCATGTCCATGTTGATGGCTAAAATGTCAAGTCGCGGACAAGTTGCTTATGCAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCATCTTTTACCGGTGAGAAAAAAGCCATAGAGAAGTATAATAGCAAGATTAAAGTTGCTTATACTACAACGGTTCAACAAGGGATAGTATCAGGTTTAGGAATGGGAACGCTTCTCCTTATTATCTTCTGCACTTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTTGTCGAGAAAGGATATAACGGTGGAACGGTCATGACTGTGATCATAGCTCTTATGACTGGTGGACTATCACTAGGTCAGGCAACCCCAAGCTTAAATGCATTTGCTGCAGGCCAAGCAGCAGCATATAAAATGTTCGAGACAATTAAAAGAAAGCCGAAAATCGATGCCTATGATACAAGTGGCACTGTCTTGGAAGATATAAAGGGAGATATTGAACTTAAAGATGTTTACTTCAGTTATCCTGCAAGGCCAGATGTTCAGATATTTGCTGGATTCTCACTGTTTGTTCCGAATGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGCGGAAAGTCCACTGTGATCAGTTTATTGGAAAGATTCTATGATCCTGAAGCTGGAGAAGTACTTATAGACGGTGTGAATTTGAAGAACTTGCAACTTAGATGGATAAGGGAACAGATTGGGCTGGTAAGTCAAGAACCTATCTTGTTTACTACTACTATCAGAGAGAACATAGCTTACGGAAAAGAAGGTGCAACTGAGGAGGAGATAACAGCTGCAATAACACTTGCTAATGCGAAAAAGTTCATCGACAAACTACCTGAGGGTCTTGGCACCATGACAGGCCAAAATGGGACTCAACTTTCTGGCGGACAAAAGCAAAGAATTGCAATTGCAAGAGCAATATTGAAGAATCCAAGAATCCTTCTTCTCGATGAAGCAACAAGTGCGTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTGGAAAAAATTATGTTAAAAAGGACTACTGTTGTGGTTGCGCATCGTTTGACAACTATCAGAAATGCTGACACAATAGCAGTGGTTCATCAAGGGAAAATCGTGGAGAGAGGAACTCACAACGAGTTAACCATGGATCCTGATGGTGCTTATTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGATGAAGGTAGCAGTAAGTTGGAAGTAGATAAGTCAGGCGACAATTTAAATATAGATAGTCACATGGCTAGATCTTCCACCCAAAGAACTTCTTTTGCGAGCCGAACTTCATCAGCGAGTCTTCAACATTCTCAGTCACTTAGAGGCTTATCTAGTAACATAGAAGCAGATATTGAACAAGGTCAACTTAATAACAAGAATAAACCTAAAAGGGTATCTATATTCCGTTTGGCCAAGTTGAACAAGCCTGAGGTTCCTGTCATACTGCTTGGAAGCATTGCTGCATTAGTACACGGTGTCGTGTTCCCTATATTTGGCTTCTTGTTTTCATCAGTCATTAATATGTTTTATAAACCTCCAGCACAGCAGAGGGAAGAATCCCGGCACTGGTCACTTCTATATGTGGGTTTGGGTTTGGTTACTCTAGTGGTTTTCCCACTGCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAGCGAATTCGTTCATTGTCATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGACGCTTCAACCGTGAAAAGTCTTGTTGGTGACACATTGGCCCTCATTGTGCAGAACATATCAACAATCACAGCTGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTTATAGTTTTGGCGGTGTCACCTATGGTTCTTATGCAAGGAATGGTTCAGATGAAGTTTCTTAAAGGATTTAGTGCCGACGCCAAGGTGATGTATGAAGAGGCAAGTCAGGTAGCAAATGATGCTGTTAGTAGTATCAGAACTGTTGCATCATTTTGTGCAGAACCAAAAGTTATGGACATGTACAGGAAAAAATGTTTAGGGCCAGAGAAACAAGGCGCTCGTTTGGGGCTTGTTAGTGGTATAGGCTTTGGTTTCTCATTTTTTGCTCTATACTGCACAAATGCTTTCACTTTCTACATAGGATCGGTTTTAGTGCACCACGGGAAAGCAACATTTGCAGAAGTTTTCAGGGTTTTCTTTAGTTTAACGATGACAGCAATCGCCGTTTCCCAGTCTACTACATTGGCTCCAGACACTAACAAGGCCAAAGATTCTGCAGCTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAGTGAAGGTGTAACACAAGATACAGTAGTTGGTAATATTGAACTTCAACATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTTTCAAAGATTTAAGCCTAAGCATCCCATCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGTCTCCTAGAGAGATTCTATGACCCGGATTCTGGACGTGTATTACTAGACGGAGTGGATATCAAAACTTTCCGATTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGAAAAGAGGGGGGAGCTACGGAGGATGAGATAATTGCAGCATCTAATGCAGCCAATGCACACAACTTTATAAGTTCTCTTCCAAATGGTTATGACACATCTGTTGGTGAAAGAGGCACACAATTATCAGGAGGACAAAAGCAACGTATTGCTATTGCGAGAGCCATGCTGAAAAACCCGAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCCGAATCAGAACGTATAGTTCAAGAGGCTCTAGATAGAGTGAGTGTTAACAGAACTACTGTGGTGGTGGCTCACCGTCTTACAACAATTCGAGGGGCTGATACTATAGCGGTAATTAAAAATGGGGCGGTCGCTGAAAAGGGAACACATGATGTGTTGATGAAGATTACTGATGGTGTTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAA 3795 0.405 MADNTELHNNSSSSTQQHEIKDNKANQKVPFYMLFNFADKIDVTLMIIGTISAMANGLAQPLMTLIFGKIINAFGSSDPSDVVKQVSKVSLLFVYLAVGSGIASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFVQLASNFFGGFVIAFIKGWRLAIVLIACMPCVIIAGGFMSMLMAKMSSRGQVAYAEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSKIKVAYTTTVQQGIVSGLGMGTLLLIIFCTYGLAMWYGSKLVVEKGYNGGTVMTVIIALMTGGLSLGQATPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTSGTVLEDIKGDIELKDVYFSYPARPDVQIFAGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLKNLQLRWIREQIGLVSQEPILFTTTIRENIAYGKEGATEEEITAAITLANAKKFIDKLPEGLGTMTGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIMLKRTTVVVAHRLTTIRNADTIAVVHQGKIVERGTHNELTMDPDGAYSQLIRLQEGEKEDEGSSKLEVDKSGDNLNIDSHMARSSTQRTSFASRTSSASLQHSQSLRGLSSNIEADIEQGQLNNKNKPKRVSIFRLAKLNKPEVPVILLGSIAALVHGVVFPIFGFLFSSVINMFYKPPAQQREESRHWSLLYVGLGLVTLVVFPLQNYFFGIAGGKLIERIRSLSFEKIVHQEIRWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNISTITAGLVIAFTANWILAFIVLAVSPMVLMQGMVQMKFLKGFSADAKVMYEEASQVANDAVSSIRTVASFCAEPKVMDMYRKKCLGPEKQGARLGLVSGIGFGFSFFALYCTNAFTFYIGSVLVHHGKATFAEVFRVFFSLTMTAIAVSQSTTLAPDTNKAKDSAASIFEILDSKPDIDSSSSEGVTQDTVVGNIELQHVNFNYPTRPHIQIFKDLSLSIPSGKTVALVGESGSGKSTVISLLERFYDPDSGRVLLDGVDIKTFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAASNAANAHNFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGAVAEKGTHDVLMKITDGVYASLVALHSSAS 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00720 1264 MobiDBLite consensus disorder prediction 608 656 - -
Trre3g00720 1264 SUPERFAMILY ABC transporter transmembrane region 680 1003 IPR036640 GO:0005524|GO:0016020
Trre3g00720 1264 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g00720 1264 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524|GO:0016887
Trre3g00720 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 986 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00720 1264 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00720 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 606 IPR027417 -
Trre3g00720 1264 FunFam ABC transporter B family member 1 358 607 - -
Trre3g00720 1264 CDD ABC_6TM_Pgp_ABCB1_D2_like 689 1004 - -
Trre3g00720 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1258 IPR003439 GO:0005524
Trre3g00720 1264 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 329 - -
Trre3g00720 1264 FunFam ABC transporter B family member 9 33 364 - -
Trre3g00720 1264 Gene3D ABC transporter type 1, transmembrane domain 679 988 IPR036640 GO:0005524|GO:0016020
Trre3g00720 1264 Gene3D ABC transporter type 1, transmembrane domain 989 1010 IPR036640 GO:0005524|GO:0016020
Trre3g00720 1264 MobiDBLite consensus disorder prediction 608 628 - -
Trre3g00720 1264 SUPERFAMILY ABC transporter transmembrane region 34 352 IPR036640 GO:0005524|GO:0016020
Trre3g00720 1264 MobiDBLite consensus disorder prediction 629 656 - -
Trre3g00720 1264 Gene3D ABC transporter type 1, transmembrane domain 33 624 IPR036640 GO:0005524|GO:0016020
Trre3g00720 1264 FunFam ABC transporter B family member 1 679 987 - -
Trre3g00720 1264 Gene3D - 1011 1261 IPR027417 -
Trre3g00720 1264 Gene3D - 358 607 IPR027417 -
Trre3g00720 1264 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00720 1264 SMART AAA_5 1048 1235 IPR003593 GO:0016887
Trre3g00720 1264 SMART AAA_5 395 581 IPR003593 GO:0016887
Trre3g00720 1264 Pfam ABC transporter transmembrane region 46 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00720 1264 Pfam ABC transporter transmembrane region 700 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00720 1264 Pfam ABC transporter 1040 1189 IPR003439 GO:0005524
Trre3g00720 1264 Pfam ABC transporter 389 535 IPR003439 GO:0005524
Trre3g00720 1264 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524|GO:0016887
Trre3g00720 1264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Trre3g00720 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1258 IPR027417 -
Trre3g00720 1264 CDD ABC_MTABC3_MDL1_MDL2 1021 1257 - -
Trre3g00720 1264 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Trre3g00720 1264 PANTHER ABC TRANSPORTER B FAMILY 9 607 IPR039421 -
Trre3g00720 1264 FunFam ABC transporter B family member 1 1011 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00720 Trre-Chr3 4974078 4978990 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00720 29 1260 Calmodulin-binding Proteins AT2G36910 44.800 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00720 K05658 - gmx:100801771 1944.47