Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00718 ATGCCACAAACAACAGAGGCAAAAGATGACGAAAAAGTTCCATTCTACAAGCTCTTCAGTTTTGCTGACAAACTTGATGTGACATTGATGATTATCGGTGTCATTTGTGCAGTGGCTAATGGTTTGTCTCGCCCTCTCATGGCACTCATTTTTGGGAAACTCATCAACACCTTTGGCTACACCGAACCATTGCACATCGTCCATGAAGTGGCTAAGGTTGCGTTATCATTTGTTTACCTTGGTATCGGCTGTGGAATAGCATTTTTTCTACAGGTAACATGTTGGATAGTGACAGGAGAAAGACAAGCCGCACGAATTCGTGGATTGTACTTGAAAACTATATTAAAGCAAGAAATTTCCTACTTTGATACTGAAGCAACAAGTGGAGAGTTTATTGGGAGAATGACTGAAGATACCATTCTCATTCAAAATGCCATTGGAGAAAAGGTTGGGAAGTTTATACAAATTATTTCATATTTTTTGGGTGGTTATGTGATTGCCTTTACAAAAGGGTGGGAATTCAGTCTTGTTTTACTTGCATGCATTCCTTGTTTTGTTATTATTGGTGGATTTATGTCAATGATGATGGCGAAAATGTCGATTCGTGGACAACTTGCTTATTCAGAAGCTGGAGTTGTTGTAGAACAAACAGTTGGAGCCATTAGAACAGTAACTTCTTTTAATGGTGAGGAAAAAGCAATTGAAAAGTACCATAAGAAGTTAAGAATTGCTTATAATAGTACAATTCAACAAGGGTTGATATCAGGGACAGGAATGGGATTACTTTTGCTTATTGTGATCGGCACCAATGCACTTGCTATGTGGTATGGTTCCAAATTGATCATTGAGAAAGGATATGATGGTGGAAGTGTCTTCAATATAATCATATCAATTAATACTGGTGGAATATTAATGTCCCTTGGTCAAGCAACACCATGCCTAAATGCATTTACAACTGGCAAAGTAGCAGCATATAAGATGTTTGAGACGATTAATAGAAAACCAAAAATTGATGCAAATGAAACAAGTGGTATTGTCTTGGAAAACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTTAGATACCCTACAAGACCAGATGTGCATATATTTTCTGGATTCTCATTCTATATTCCAAGCGGCACAACTGCTGCTTTTGTTGGTCAAAGTGGTAGTGGAAAGTCAACTATAATTAGTTTATTAGAAAGATTCTATGATCCTGAATCTGGAGAAGTGCTTATAGATGGTGTCAACTTGAAGAATTTTCAAGTTAGATGGATAAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTGTCTTGTTTACTGCTAGTATCAAGGAGAACATAGCATATGGGAAAGAAGGTGCAACTGATGAAGAAATAACAACAGCAATAACACTCGCCAATGCCAAAATATTCATTGATCAACTCCCTCAGGGTCTTGATACAATGGTAGGAGGTCATGGAACTCAACTTTCTGGTGGACAAATACAAAGAATTGCAATTGCAAGGGCAATATTGAAGAATCCAAGAATCCTTCTTCTTGATGAAGCGACTAGTGCATTGGATGTTGAGTCTGAAAGTGTTGTTCAAGAAGCGTTGGAAAAAGTAATGTCACAAAGGACCACCGTAGTTGTTGCACATCGTTTAATAACTATTAGAAATGCTGACATCATAGCAGTGGTTCATCAGGGAAAAATTGTGGAAAAAGGTACTCATGATGAGTTAATCAAGGATCCTTGTGGTGCTTATTCTCAGCTTATTAGTCTACAAGAAGCAGAAGCAAAAGAAAGCCATAATTCTGAAACAGATGAGTCGAAGAACAATTTCAATTTAGATAGTCATGTGACTAGAACATCCTTTGCAAAATCAATAAGCCAAGGTTCATATAGAACTAATGATGATGTTGAAAGTAGTGAACTTGATAATGTGAAGCGCCAAAAAGTTTCTATTAAACGTTTGGCAAAGTTGAATAAGCCCGAGGTTCTTATCTTACTACTTGGATCCATAGCAGCAGCAGTACATGGTGTTATTTTTCCTATAGTTGCCCTATTTCTTTCATCAGCTATTGATAGTTTCTATGAACCTCCTGAGAAACTTAGAAAAGATTCTGAGTATTGGTCAGTTTCATTTCTTGGTTTGGGATTTATAACTATAGTGGCTATGGCAGTGCAGAACTACTTATTTGGAATTGCTGGTGGAAAACTAATAGAAAGAATTCGTTCATTGACATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTTGACCACCCTTTAAATTCAAGTGGTGCAGTTAGTGCAAGGTTAGCTACTGATGCTTCAACTGTGAGAACTCTTGTCGGTGACAAATTAGCCCTCATTGTGCAAAACATAGCAACAGTTATAGCAGGACTAGTTTTAGCATTTAGTGCTAATTGGATTCTATCTTTTATGGTTCTAGCCGTGGCATCATTGTTGATCATACACGAATACATGAAAGCCAAGTTTCTAAAAGGATTCAGTGCAGGTGCAAAGGTGAAGTATGAAGAGGCAAGTCAAGTGGCAAATGATGCCATTGATAGCATCAGAACCGTCGCATCATTTTGTGCTGAACAAAAGATGATGGATATGTACCAAAAAAAATGTTTAGCTCCAGAAAAAAAAGGTGTTAGGTTAGGGCTTGTTAGTGGTATAGGAATAGGTTTCACTTACTTTGCTCTATACTGCACAATTGCTTTCTATTTCTACGTAGGATCCATTCTTGTGCACCACGGGAAAGCAAATTTTGAGGAGGTTTTCAAGGTTTACTTTTGTTTAACAGTTACAGCAATGGCTGTTTCAAAGACTATTGCTTTAGGACCAGATACCAGCAAGGCTAGAGATTCAACAGCTTCAATATTTGAAATTCTTGATAGTAAACCAACAATTGACTCAAGTAATAATGACGGTACGATACTAGAAACTGTGAAAGGTGATATTGAACTTCAACAAATCAAATTTAGGTACCCAACAAGGCCTAATATTCAAATTTTCGAAGATTTGTGTCTAAGCATCCCAGCTGGTAAGACTGTTGCTTTAGTTGGAGAAAGTGGCAGTGGAAAATCAACAATTATAAGTCTCTTAGAGAGATTTTATAACCCTGATTCTGGACATATATTACTAGATGGAGTGAATATTAAAACTTTCAAATTAAGCTGGTTGAGACAACAAATGGGTTTGGTTTGTCAAGAGCCTATTATTTTCAATGAAAGCATACATGCAAACATAGCTTATGGAAAACAAGGAAGCACTGCCACAGAAGATGAAATAATTGCAGTAGCAAAAGCAGCAAATGCACACAACTTCATAAGTTCTCTTCCAAATGGTTACGAAACATTGGTTGGTGAAAGCGGCACACATTTATCAGGTGGACAAAAGCAACGTATAGCAATTGCAAGAGCCATATTGAAAGATCCCAAAATACTTTTACTTGATCAAGCAACAAATGAACTTGATGCCGAATCAGAACTCGTAGTTCAAGAGGCTTTAGATAGAGTGAGTGTTAATAGAACTACTGTTGTTGTGGCTCACCAACTTGCGACGACTAAAGGTGCTGATATTATAGCTGTAGTGAAAAATGGAGTGATTGCTGAAAAGGGTACACATGATTTGTTGATGAAGATTGATGGTGGAGTTTATGCTTCATTGGTTACTCTTCATATTAGTGCATCATAG 3699 0.3725 MPQTTEAKDDEKVPFYKLFSFADKLDVTLMIIGVICAVANGLSRPLMALIFGKLINTFGYTEPLHIVHEVAKVALSFVYLGIGCGIAFFLQVTCWIVTGERQAARIRGLYLKTILKQEISYFDTEATSGEFIGRMTEDTILIQNAIGEKVGKFIQIISYFLGGYVIAFTKGWEFSLVLLACIPCFVIIGGFMSMMMAKMSIRGQLAYSEAGVVVEQTVGAIRTVTSFNGEEKAIEKYHKKLRIAYNSTIQQGLISGTGMGLLLLIVIGTNALAMWYGSKLIIEKGYDGGSVFNIIISINTGGILMSLGQATPCLNAFTTGKVAAYKMFETINRKPKIDANETSGIVLENIKGDIELKDVYFRYPTRPDVHIFSGFSFYIPSGTTAAFVGQSGSGKSTIISLLERFYDPESGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKENIAYGKEGATDEEITTAITLANAKIFIDQLPQGLDTMVGGHGTQLSGGQIQRIAIARAILKNPRILLLDEATSALDVESESVVQEALEKVMSQRTTVVVAHRLITIRNADIIAVVHQGKIVEKGTHDELIKDPCGAYSQLISLQEAEAKESHNSETDESKNNFNLDSHVTRTSFAKSISQGSYRTNDDVESSELDNVKRQKVSIKRLAKLNKPEVLILLLGSIAAAVHGVIFPIVALFLSSAIDSFYEPPEKLRKDSEYWSVSFLGLGFITIVAMAVQNYLFGIAGGKLIERIRSLTFNKVVHQEISWFDHPLNSSGAVSARLATDASTVRTLVGDKLALIVQNIATVIAGLVLAFSANWILSFMVLAVASLLIIHEYMKAKFLKGFSAGAKVKYEEASQVANDAIDSIRTVASFCAEQKMMDMYQKKCLAPEKKGVRLGLVSGIGIGFTYFALYCTIAFYFYVGSILVHHGKANFEEVFKVYFCLTVTAMAVSKTIALGPDTSKARDSTASIFEILDSKPTIDSSNNDGTILETVKGDIELQQIKFRYPTRPNIQIFEDLCLSIPAGKTVALVGESGSGKSTIISLLERFYNPDSGHILLDGVNIKTFKLSWLRQQMGLVCQEPIIFNESIHANIAYGKQGSTATEDEIIAVAKAANAHNFISSLPNGYETLVGESGTHLSGGQKQRIAIARAILKDPKILLLDQATNELDAESELVVQEALDRVSVNRTTVVVAHQLATTKGADIIAVVKNGVIAEKGTHDLLMKIDGGVYASLVTLHISAS 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00718 1232 SUPERFAMILY ABC transporter transmembrane region 12 338 IPR036640 GO:0005524|GO:0016020
Trre3g00718 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 667 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00718 1232 ProSitePatterns ABC transporters family signature. 493 507 IPR017871 GO:0005524|GO:0016887
Trre3g00718 1232 FunFam ABC transporter B family member 1 344 593 - -
Trre3g00718 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00718 1232 FunFam ABC transporter B family member 9 17 349 - -
Trre3g00718 1232 CDD ABC_MTABC3_MDL1_MDL2 988 1227 - -
Trre3g00718 1232 CDD ABC_6TM_Pgp_ABCB1_D2_like 656 971 - -
Trre3g00718 1232 PANTHER ABC TRANSPORTER B FAMILY 5 597 IPR039421 -
Trre3g00718 1232 CDD ABC_6TM_Pgp_ABCB1_D1_like 30 327 - -
Trre3g00718 1232 SUPERFAMILY ABC transporter transmembrane region 649 972 IPR036640 GO:0005524|GO:0016020
Trre3g00718 1232 FunFam ABC transporter B family member 1 978 1229 - -
Trre3g00718 1232 Gene3D ABC transporter type 1, transmembrane domain 17 957 IPR036640 GO:0005524|GO:0016020
Trre3g00718 1232 Pfam ABC transporter 1008 1157 IPR003439 GO:0005524
Trre3g00718 1232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 354 590 IPR003439 GO:0005524
Trre3g00718 1232 SMART AAA_5 1015 1209 IPR003593 GO:0016887
Trre3g00718 1232 SMART AAA_5 381 567 IPR003593 GO:0016887
Trre3g00718 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1227 IPR027417 -
Trre3g00718 1232 Gene3D - 979 1231 IPR027417 -
Trre3g00718 1232 ProSitePatterns ABC transporters family signature. 1129 1143 IPR017871 GO:0005524|GO:0016887
Trre3g00718 1232 CDD ABC_MTABC3_MDL1_MDL2 354 592 - -
Trre3g00718 1232 Gene3D - 344 593 IPR027417 -
Trre3g00718 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 592 IPR027417 -
Trre3g00718 1232 Pfam ABC transporter 374 521 IPR003439 GO:0005524
Trre3g00718 1232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 988 1226 IPR003439 GO:0005524
Trre3g00718 1232 Pfam ABC transporter transmembrane region 667 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00718 1232 Pfam ABC transporter transmembrane region 30 300 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00718 1232 FunFam ABC transporter B family member 1 646 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00718 Trre-Chr3 4963266 4969602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00718 13 1228 Calmodulin-binding Proteins AT2G36910 42.283 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00718 K05658 - gmx:100792531 1859.73