Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00717 ATGGCACAGAACACTGAGGTTGATGATCATGGAAAAGACAACAAATCCAACCAAAAAGTTCCATTCTATAAGCTCTTCACATTTGCTGATAGCCTTGATGTTACATTGATGATCATTGGTACTATCTCTGCTGCTGCTAATGGAATGACACAACCTATCATGACTCTCATTCTTGGCAAAATGATCAACATCTTTGGTTCCACTGATTCACATCACATTGTCAAGGAAGTTTCTAAGGCTTCGTTATGGTTTATTTACCTGGCCGTTGGTTCTGGAATCGTATCATTCCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAAACGATATTGAAGCAGGATATTGCATTCTTTGATACCGAAACAAACACAGGAGAAGTAATCGGTAGAATGTCTGGTGACACAATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTGCAACATTTTTTGGTGGCTTTGTGGTTGCTTTTGTAAAAGGATGGAGACTAGCTTTAGTTTTACTTGCATGTTTACCTTGTGTTGTTATTGTTGGCGGATTTATGTCGATGCTTATGGCTAGAATGTCAACTCGTGGACAAGCTGCTTATACAGAAGCGGGAAATATTGTTGATCAAACAGTGGGAGCCATCAGAACAGTTGCATCATTTACTGGGGAGAAAAAAGCAATAGAAAAGTACAATAACAATTTAAAAGTTGCTTATACAACAACGGTTCAACACAGAATTGTCTCAGGGTTTGGAATGGGGGCACTATTATTGATTATCTTTAGCACCTATGGACTTGCAATGTGGTATGGTTCCAAATTAGTCATCGAGAAAGGATATACTGGTGGAACTGTCATGAGTGTAATCATATGTCTTATGACCGGTGGAATGTCATTGGGTCAGTCAACCCCATGCTTAGATGCATTTGCTGCAGGACAAGCAGCGGCATATAAAATGTTTGAGACGATTAAAAGAAAGCCGAAAATTGATCCATATGACACAAGTGGCGTTGTTTTGGAAGATATAAAGGGAGATATTGAACTTAAAGATGTTTACTTCAGATATCCTGCAAGGCCAGATGTGCAGATATTTGCTGGATTCTCGTTGTTTGTTCCGAATGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCCACAGTGATCAGTTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAGGTGCTTATAGACGGTGTTAATTTGAAGAACTTGCAACTTCGAGGGATAAGGAAACAAATTGGGTTGGTTAGTCAAGAACCTATCTTGTTTACTACTACTATCAGAGAGAACATAGCGTACGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACACTCGCCAATGCCAAGAAATTCATTGACAAACTGCCTCAGGGTCTTGACACCATGACAGGGCAAAATGGGACTCAACTTTCTGGCGGGCAAAAGCAAAGAATTGCAATTGCAAGAGCAATATTGAAGAATCCAAGAATCCTTCTTCTCGATGAAGCAACAAGTGCGTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAGTGATGTTCGAAAGGACTACTGTTGTTGTTGCACATCGTTTGACAACTATTAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGAAAAATCGTGGAGAAAGGAGCTCATGATGAGTTAATCAAGGATGTAGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAAGCCAAAAGTCAGAAGCAGATAAGTCAAGTCACATTTTAAATAGTCAAATGTCTAGATCTTCTAACCAGAGAATATCCTTTGCGAAATCAACAAGTCAAAGATCATCAGGGAGACTTTCTCAATCACAAAGATTTTCTCTTCCTCATCAAACAGAAGAATCAAATATTGAAGAAGGTCAACTTGAAAATAAGAAACGCAAAAACGTTTCTATAAGACGTTTGGCCAACTTGAACAAACCTGAGGTTCCTGTCTTACTACTTGGATCAATTGCTGCAATAGGGAATGGTGTAGTGTTCCCTATATTTGGCCTAGTGTTTTCATCAGCAATTACTATGTTTTATAAACCTCCGGAACAACAGAAGAAAGATGCTAGGCTTTGGTCACTTCTATATGTCGGTTTGGGATTGTTTACTCTAGTTGTTTTACCACTGCAGAATTACTTCTTTGGTGTTGCAGGTGGAAAACTTGTAGAACGAATTCGTTCGCTGACATTCACAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATAACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGATTATCTACCGACGCTTCAATGGTTAAAAGTCTTGTCGGTGACACATTGGCCCTTATTGTGCAAAACATATCGACAATCACAGCTGGTCTAATCCTAGCATTCACTTCTAATTGGATTCTTGCTTTTATAGTTTTGGCTGTGTTACCAGTTGTCCTTATACAAGGAATTATTCAGATGAAATTTCTTCAAGGATTCAGTGCAGATGCCAAGGTGATGTATGAAGAAGCAAGTCAAGTGGCAAATGATGCTGTTAGTAGCATCAGAACTGTTGCATCATTTAACGCAGAATCAAAGGTGATGAATATGTACCAGAAGAAATGTTCCGGGCCAGAAAAACAAGGTGTTCGTTTGGGGCTCGTGAGTGGCGCAGGATTTGGCTTCTCTTTTGTGGCTCTATATTTGATGACTGCTTTTTGTTTCTACATGGGATCTGTTCTAGTGCAACATGGGAAAGCAACTTTCCAAGAAGTTTTCAAGGTTTTCTTTAGTTTAACTATAACTGCAGTAGGTATTTCTCAGTCAAGTACCTTGGCACCAGACACTAATAAGGCGAAAGATTCAACAGCTTCAATATTTGAAATTCTAGACAGTAATCCAACTATTGACTCAAGTAGCAACGAAGGCGTAACATTAGAAACAGTCACAGGTGATATTGAACTTCAACATGTCAGCTTCAATTATCCAACAAGGCCTCATATTCAAATTTTCAAAGATTTATGTCTAAGCATCCCTGCCGGAAAGACTGTTGCATTGGTTGGAGAAAGTGGCAGTGGAAAATCAACCGTTATAAGTCTCTTAGAGAGATTTTATGACCCGGATTCTGGACGTGTATTACTAGACGGAGTGGATATCAAAAATTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGCGCCAACATAGCTTATGGAAAAGAAGGAGATGCTACAGAAGATGAGATAATTGCAGCAGCTAATGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTACGACACATCAGTTGGCGAAAGAGGCACACAATTATCAGGAGGACAAAAGCAACGTATTGCTATTGCAAGAGCTATGCTGAAAAACCCGAAAATACTTTTGCTTGATGAGGCAACAAGTGCACTTGATGCCGAATCAGAACGTATAGTTCAAGAGGCTCTAGATAGAGTGAGTGTTAACAGAACTACTGTGGTGGTGGCTCACCGTCTTACAACAATTCGAGGGGCAGATACTATAGCAGTAATTAAAAACGGTGTGGTTGCTGAAAAGGGAAGACATGATGCGTTGATGAATATTAATGATGGTGTTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATGA 3756 0.3986 MAQNTEVDDHGKDNKSNQKVPFYKLFTFADSLDVTLMIIGTISAAANGMTQPIMTLILGKMINIFGSTDSHHIVKEVSKASLWFIYLAVGSGIVSFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFIQLAATFFGGFVVAFVKGWRLALVLLACLPCVVIVGGFMSMLMARMSTRGQAAYTEAGNIVDQTVGAIRTVASFTGEKKAIEKYNNNLKVAYTTTVQHRIVSGFGMGALLLIIFSTYGLAMWYGSKLVIEKGYTGGTVMSVIICLMTGGMSLGQSTPCLDAFAAGQAAAYKMFETIKRKPKIDPYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLRGIRKQIGLVSQEPILFTTTIRENIAYGKEGATDEEITTAITLANAKKFIDKLPQGLDTMTGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMFERTTVVVAHRLTTIRNADTIAVVHQGKIVEKGAHDELIKDVDGAYSQLIRLQEGEKESQKSEADKSSHILNSQMSRSSNQRISFAKSTSQRSSGRLSQSQRFSLPHQTEESNIEEGQLENKKRKNVSIRRLANLNKPEVPVLLLGSIAAIGNGVVFPIFGLVFSSAITMFYKPPEQQKKDARLWSLLYVGLGLFTLVVLPLQNYFFGVAGGKLVERIRSLTFTKVVHQEISWFDNPANSSGAVGARLSTDASMVKSLVGDTLALIVQNISTITAGLILAFTSNWILAFIVLAVLPVVLIQGIIQMKFLQGFSADAKVMYEEASQVANDAVSSIRTVASFNAESKVMNMYQKKCSGPEKQGVRLGLVSGAGFGFSFVALYLMTAFCFYMGSVLVQHGKATFQEVFKVFFSLTITAVGISQSSTLAPDTNKAKDSTASIFEILDSNPTIDSSSNEGVTLETVTGDIELQHVSFNYPTRPHIQIFKDLCLSIPAGKTVALVGESGSGKSTVISLLERFYDPDSGRVLLDGVDIKNFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGDATEDEIIAAANAANAHSFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDRVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDALMNINDGVYASLVALHSSA 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00717 1251 CDD ABC_MTABC3_MDL1_MDL2 1009 1245 - -
Trre3g00717 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1246 IPR003439 GO:0005524
Trre3g00717 1251 SMART AAA_5 386 572 IPR003593 GO:0016887
Trre3g00717 1251 SMART AAA_5 1036 1223 IPR003593 GO:0016887
Trre3g00717 1251 SUPERFAMILY ABC transporter transmembrane region 669 990 IPR036640 GO:0005524|GO:0016020
Trre3g00717 1251 SUPERFAMILY ABC transporter transmembrane region 24 344 IPR036640 GO:0005524|GO:0016020
Trre3g00717 1251 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Trre3g00717 1251 MobiDBLite consensus disorder prediction 610 656 - -
Trre3g00717 1251 Pfam ABC transporter 380 526 IPR003439 GO:0005524
Trre3g00717 1251 Gene3D - 357 618 IPR027417 -
Trre3g00717 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 597 IPR027417 -
Trre3g00717 1251 Gene3D - 999 1251 IPR027417 -
Trre3g00717 1251 FunFam ABC transporter B family member 1 349 598 - -
Trre3g00717 1251 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524|GO:0016887
Trre3g00717 1251 FunFam ABC transporter B family member 9 24 354 - -
Trre3g00717 1251 Gene3D ABC transporter type 1, transmembrane domain 82 983 IPR036640 GO:0005524|GO:0016020
Trre3g00717 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00717 1251 FunFam ABC transporter B family member 1 667 975 - -
Trre3g00717 1251 Pfam ABC transporter transmembrane region 688 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00717 1251 Pfam ABC transporter transmembrane region 37 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00717 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Trre3g00717 1251 PANTHER ABC TRANSPORTER B FAMILY 7 598 IPR039421 -
Trre3g00717 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 992 - -
Trre3g00717 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Trre3g00717 1251 MobiDBLite consensus disorder prediction 598 664 - -
Trre3g00717 1251 FunFam ABC transporter B family member 1 999 1249 - -
Trre3g00717 1251 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Trre3g00717 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre3g00717 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 319 - -
Trre3g00717 1251 Pfam ABC transporter 1028 1177 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00717 Trre-Chr3 4956855 4962287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00717 20 1248 Calmodulin-binding Proteins AT2G36910 45.586 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00717 K05658 - gmx:100801771 1914.04