Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00695 ATGGCTTTTCCAAATCAATCCATGTCAGATTCTCCACAGAGAAAGATAGGAAGGGGAAAAATTGAGATCAAAAGGATCGAAAACACGACGAATCGCCAAGTAACTTTCTGCAAACGAAGAAATGGCTTACTGAAAAAAGCATATGAACTATCTGTTCTTTGTGATGCAGAAGTTGCTCTAATAGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGAAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGACAAATTGCGCGTGCAAATCAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGACCTGAAAAACTTGGAGTCTAAATTAGAAAAAGGAATAAGTAGGATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAAAGGGAGATAGATTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCATCAACATAATATTAATATGAGTTTGTTACCTGGAGGCACAAACTATGAATCTATGCAGTCTCATCAAGCTGAGCAGCAGCAGCAGCAATATGATTCTCGTGGATACTTTCAAGTGACTGGTTTACAACCAAGTAGTCAGTATGGAAGACAAGACCACATGTCCCTTCAATTAGTGTAA 756 0.3915 MAFPNQSMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGTGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHQHNINMSLLPGGTNYESMQSHQAEQQQQQYDSRGYFQVTGLQPSSQYGRQDHMSLQLV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00695 251 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g00695 251 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre3g00695 251 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre3g00695 251 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Trre3g00695 251 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 MobiDBLite consensus disorder prediction 200 223 - -
Trre3g00695 251 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Trre3g00695 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 Coils Coil 139 159 - -
Trre3g00695 251 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 Coils Coil 102 129 - -
Trre3g00695 251 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Trre3g00695 251 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Trre3g00695 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 218 - -
Trre3g00695 251 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00695 Trre-Chr3 4798722 4804408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00695 14 251 MADS-box Gene Family AT3G58780 66.946 2.74e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre3g00695 K-box 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00695 K09264 - gmx:732595 411.379