Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00682 ATGAGAGAGAGTGAAGAGAGAGAAGCTCTGGGGAAGAGTAGGGCTCAAAAAAGAAACGGGTTCCTACTCAACCTGGACAAGACCACGACGTCATTTTTCATAACCAATTTTCCGGAGGAGGCCACAACGGAGGACTTGTGGAAGCTGTTTCTGAAGTATGGGAGGATTGGAGAGGTGTTCATACCAAGGAAGCGGGATAAGAAGGGACGTCGTTTTGGGTTCGTCAAGTTCAAAGAAGTGGTGGAGATTGAAGCTTTGACTGAAAGTTTGTGCGACGTTTGGATGGGCTCCTTCAAGCTCATTGTCAACCGTTCCCGCTTTGCTAGGTCGGAGAAGAAGGAGGTTCCGCCGTCAACTCCGACAGAGGGGTCAAGTTCAGCTTTGAAGGAGGTGAAGCTAGGAGGGCCGTATAGAAATGCGCTTCTTGGAAAGTCAGGGTTGAGGTCACAGGAGGTCTCGGAGATCACGGCGGCAGTGAATATGGAGTTTGTGAAGGAGTTGAAGGAGAGCATGGTCGGAACCCTAGCCAAAGAGAAGGATGTTCGCCGTATTCAGTCTATTCTCTATATGGAAGGGTTTCCATCGGTGACTGTCTCTCATATGGGGGGGAACTTGGTCCTCATTAGAAGTAAGGTCGAAGGAGATGTTGGGAGGTTGCTTCGGAGTAAATATGAGTGTTTGAAGTATTTTTCTCTGAGATCAAGCCTTGGGGCCCTGGTTTGCGAACGGTGCAACGTGAGGTGTGGGTTCAGGTTTGATGTTGCTAGGTTGAAGATCCTCACTTCTTCCTGGGAAATTATTGATACTGTTATCAAGGTGGTGGTGGAAGGGGCCATCTTCAATGTATGGGCAGTGGAGGAAAGGAGTAATCAAAGATCAGCGGTGGTTTTGGGGGATGGTGTGGAGGATGAAGGGAGTGCGGCTGTTCCGTCGGAGGAGTCGGGGGAGGTGGCGGAAGGGTATGTTGCCGGCGTAGAAAACTCGGAGGAGGATGAACCGTCGGGTCCTGAGAATGATGGCGACGTTAAAATTCAAATCCAGCATGGGGGGAATACCGAGAAGGAAAGGGATAGGTCCATGTGTGATCAGGTGCCAAAAGGGGATAATTGTTTGCTGACTTGTGCAAAGTCAACAAATGTTTGTGACACACAAAGGGATATTCTTACTTGTGACCCAGCTTTTGTAGAAAGTGAGATAGTGATGGAACAAGTGGCAAAGGAGACAGAGGGAGTTGTTCCTATAAAGGTGTATGAAGAAGACAAATATGCAGGTGAGGGGCCCAGGAGTGTGGAGGAATGTGCTGAAGCGGTTGGTGTTGTAGGGGGTGTAGGTCACGCGCCCGTCATCCCGTGTGTGGGGGATTCTATTACTAATCCGGGTCATGGGGGTCCAGTTGAGTTGGGCCTTAATAACCAGACAAGTCCGTTTGCTGGCCCAAACCAAGAAGAGGAGGAAACACGTGTTTCTTTCATATCAGAGCCTGAGGATGTTCTTCTTTCTCACTTATCTGTTGTCCCAAAAAAAGTTTCAAAATGGAGGAAGCATAAACAAAGTTCAAAATTCCCCCAATTAGGTGTTCCAAAGTGTTTGCAATTGGTGGAAGCTGTTCAGGAGGGAGTTCAAAAAACTCGGCGAAGGAGGCATAAGGGTGGCGGAGGGACGGCGGTGGGAGAGAGATCTGGAGGGACGGAGGAAGTGTTGGGGCGAAGTGAAAGTTCCGGAAATGAAGATAATAATGTCAATCTAGTGATGCATCCTCAATTTTCTAGCAATCATATCGCTAATTCTGGCATTAATTTAATTTTGGAGGATGGTGATTCTTTAGTTCCGGAAACGCAGAATGTTAGTAATGAAGGTGACCGTGCTTTAGTAGTGGAGGCAGCTAAGCTTCTTCAAATTCAAAAAGAAGTTGGGTTTTCCTTTGAGGTGGTGGAGGATGTCACTATTAAACAACTTGTGGAGCAAGAGGAATGTGATAGAGCAAAGAAGTTGGCCATGGAGGGGAGGAATGGTGATCAATGA 2022 0.4787 MRESEEREALGKSRAQKRNGFLLNLDKTTTSFFITNFPEEATTEDLWKLFLKYGRIGEVFIPRKRDKKGRRFGFVKFKEVVEIEALTESLCDVWMGSFKLIVNRSRFARSEKKEVPPSTPTEGSSSALKEVKLGGPYRNALLGKSGLRSQEVSEITAAVNMEFVKELKESMVGTLAKEKDVRRIQSILYMEGFPSVTVSHMGGNLVLIRSKVEGDVGRLLRSKYECLKYFSLRSSLGALVCERCNVRCGFRFDVARLKILTSSWEIIDTVIKVVVEGAIFNVWAVEERSNQRSAVVLGDGVEDEGSAAVPSEESGEVAEGYVAGVENSEEDEPSGPENDGDVKIQIQHGGNTEKERDRSMCDQVPKGDNCLLTCAKSTNVCDTQRDILTCDPAFVESEIVMEQVAKETEGVVPIKVYEEDKYAGEGPRSVEECAEAVGVVGGVGHAPVIPCVGDSITNPGHGGPVELGLNNQTSPFAGPNQEEEETRVSFISEPEDVLLSHLSVVPKKVSKWRKHKQSSKFPQLGVPKCLQLVEAVQEGVQKTRRRRHKGGGGTAVGERSGGTEEVLGRSESSGNEDNNVNLVMHPQFSSNHIANSGINLILEDGDSLVPETQNVSNEGDRALVVEAAKLLQIQKEVGFSFEVVEDVTIKQLVEQEECDRAKKLAMEGRNGDQ 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00682 673 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 29 149 - -
Trre3g00682 673 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 107 IPR000504 GO:0003723
Trre3g00682 673 SMART rrm1_1 31 103 IPR000504 GO:0003723
Trre3g00682 673 CDD RRM_SF 33 103 - -
Trre3g00682 673 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 86 IPR000504 GO:0003723
Trre3g00682 673 SUPERFAMILY RNA-binding domain, RBD 26 109 IPR035979 GO:0003676
Trre3g00682 673 MobiDBLite consensus disorder prediction 541 578 - -
Trre3g00682 673 Gene3D - 29 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00682 Trre-Chr3 4712499 4714627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00682 26 115 Eukaryotic Initiation Factors Gene Family AT3G16380 31.111 1.52e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00682 - K12891 tpra:123892180 94.3597