Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00677 ATGGTTGATAATCCAGAAAGCAATGAAATTCATCAAGAGGTGGTTTTAGATGTAAATGGTGATACCTCAAAAAATTGTGATGAAGAGTCAGACATCAAAGACTCTGTGCCCCTTCTAAAGAAGTTGGTAGCGGAAGTGGTGGGAACATACTTGATGATATTTGCTGGTTGTGCTGCTGTTGATGTGAACTTAAACAATGATCATGTAGTGACACTACCTGGAATTGCATTTACTTGGGGATTCACAGTTATGGTTTTGATTTATTCACTTGGTCACATTTCTGGTGCTCATTTCAACCCAGCTGTTACCATTGCTCATGCTTCCACTAAAATATTTCCCCTCAAACAGGTACCAGCTTATATTATAGCTCAGATTCTTGGATCCACACTAGCAAGTGGAACCCTTAGACTTATATTTAATGGTGAAGATGACCATTTTATTGGAACACTTCCAGCTGGTTCTAACCTGCAAGCTTTTGTAATTGAGTTCATATGCACTTTCTTCCTTATGTTTGTTATTACTGGAGTGGCCACAGATAACAGAGCGATTGGTGAATTAGCAGGGCTTGCAGTTGGGTCTACAATAATAGTAGATATATTGTTTGCAGGACCAATGACAGGAGCATCAATGAATCCTGCAAGGAGTTTAGGACCTGCTATTTTGTACCATGAATATACAGGATTATGGATATATTTGATTTCACCAACTCTAGGAGCTTTGGTAGCTACATGGACTTACAATTTCATCAGACACACAAACAAGCCAAAGCGTGATGAGCGCACCAAGATTGAGCTCACCAAGATTGTCCCCTCCTTCCTCAGAAGCAGGTCTTAA 834 0.3993 MVDNPESNEIHQEVVLDVNGDTSKNCDEESDIKDSVPLLKKLVAEVVGTYLMIFAGCAAVDVNLNNDHVVTLPGIAFTWGFTVMVLIYSLGHISGAHFNPAVTIAHASTKIFPLKQVPAYIIAQILGSTLASGTLRLIFNGEDDHFIGTLPAGSNLQAFVIEFICTFFLMFVITGVATDNRAIGELAGLAVGSTIIVDILFAGPMTGASMNPARSLGPAILYHEYTGLWIYLISPTLGALVATWTYNFIRHTNKPKRDERTKIELTKIVPSFLRSRS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00677 277 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Trre3g00677 277 SUPERFAMILY Aquaporin-like 36 255 IPR023271 -
Trre3g00677 277 Gene3D Glycerol uptake facilitator protein. 3 262 IPR023271 -
Trre3g00677 277 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00677 277 PANTHER AQUAPORIN NIP2-1 28 256 IPR034294 -
Trre3g00677 277 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00677 Trre-Chr3 4685573 4687866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00677 4 277 Major Intrinsic Protein MIP AT5G37810 51.613 1.11e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00677 K09874 - gmx:100812577 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04760 7 55155609 55157788 Trre3g00677 3 4685573 4687866 PCT