Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00676 ATGGCTGATCATTCATCAAACAATGGCAACCATGACATAGTTTTGAATGTCAATGATGCCTCAAAAAATTGTGACGACTCCTCAGGATTTAAAGATTGTGTCCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACCTACTTCTTGATATTTGCAGGATGTGCTGCTGTTGTAGTGAACCTTGACAATGACAAAGTGGTAACACTTCCTGGAATTGCAATTGTATGGGGACTTGCTGTTATGGTATTGGTTTATTCTGTTGGTCACATTTCTGGTGCTCATTTCAATCCTGCTGTTACCATTGCCCATGCTTCAACTAGAAGGTTCCCCATTAAGCAGGTACCATGTTATATAATAGCTCAACTTCTTGGATCTACACTTGCAAGTGGAACACTTAGACTTATATTCAATGGCAACGAAAATCATTTTACAGGAACACTCCCTGCTGGTTCTGATCTCCAAGCTTTTGTAGTTGAATTCATAATCACTTTTTATCTTATGTTTGTCATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGAGCTACGGTACTTCTAAATGTGATGTTTTCCGGGCCAATTACCGGAGCATCAATGAATCCTGCAAGAAGTTTAGGACCTGCTATTGTTCATACAGAGTATAGAGGAATATGGATATATTTAGTGTCACCAACTCTTGGTGCGGTGGCCGGTACATGGGCGTATACTTTCATCCGATACACAAACAAGCCGGTTCGTGAAATTAGTAAGAGTGCCTCTTTCATTAAAGCAGTTGAAAATGGGCGGAGCTAA 819 0.4127 MADHSSNNGNHDIVLNVNDASKNCDDSSGFKDCVPLLQKLVAEVVGTYFLIFAGCAAVVVNLDNDKVVTLPGIAIVWGLAVMVLVYSVGHISGAHFNPAVTIAHASTRRFPIKQVPCYIIAQLLGSTLASGTLRLIFNGNENHFTGTLPAGSDLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVHTEYRGIWIYLVSPTLGAVAGTWAYTFIRYTNKPVREISKSASFIKAVENGRS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00676 272 PANTHER AQUAPORIN NIP2-1 22 263 IPR034294 -
Trre3g00676 272 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Trre3g00676 272 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre3g00676 272 SUPERFAMILY Aquaporin-like 35 257 IPR023271 -
Trre3g00676 272 Gene3D Glycerol uptake facilitator protein. 4 260 IPR023271 -
Trre3g00676 272 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00676 Trre-Chr3 4668925 4671572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00676 23 269 Major Intrinsic Protein MIP AT5G37820 59.608 1.69e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00676 K09874 - gmx:100786924 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00676 3 4668925 4671572 Trre3g00676 3 4668925 4671572 ECH
Trre7g04759 7 55147190 55149617 Trre3g00676 3 4668925 4671572 PCT