Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00669 ATGATGGAGCAAAGTAATGGAAGTTCAAGTTCCAATTCATCATTTCCTCCTTTTCTCTCTAAGACTTATGAGATGGTTAATGATCCTTCTACTGATGCAATTATTTCATGGAGTGATACCAATAGAAGTTTCATTGTTTGGAATCCACCAGTTTTTACAAGTGATTTGTTACCTAAGTTCTTTAAGCATAAGAACTTCTCAAGCTTCATCAGACAGCTTAATACTTATGGCTTTCGAAAAGTTGATCAAGAACTATGGGAATATGCAAATGATGATTTTGTAAGAGATCAACCTCATCTTATGAAGAATATCCATAGGAGCAAACCAGTTCATAGCCATTCTTCGCAGAATTCCCGTGGCCAAGGGGCTGCTGCTGCTGCTCCAATAACAGAATCCGAACGCCGAAATTTGAATGCGGAGATTCAAAGACTTCAAGATGACAAAGAACAACTACTTTTGGAGTTGCAGCGACAGGACGAGGAGTGGAAAGCGAAACAAACACTGTTACATTACGCGAAGGATCGTTTGGAAAAGTTGGAACAGAGGCAACAAACCATACTCTCTTCCGTCGGTCAAGTGCTGCAGAAACCTAGGGATGAGTCAAGTCTCTGGCCACTGACAGAAAACTCAAAGAGAAAACGTAAGTTTCTGAGAAATATTCCCTTTAGTAATGACGCTAGCATTGAAGATAATATGGAAACTTCTTGTGTGTTACCTAGTGAAAATGCTGAGAGTGAATCTATTCTCTCGTTAAGCAAGGGACGATTGGATCTGCTCGAGTCATCATTGAAGTTTTGGGAGAATATTGTACATGATATTAGTGAAACTTCTTTTAAAAGTCACTCAAACTTAGATTTTGATGACTCTATGAGCTGTGCAAATAGTCCTAAAATATCTTGTGTGCAACTAGATTTTGAAGTTCAGCACAAGTCACCGGGAATCGACACATACTCTGAGCCAGCTGCTGTCATTGTTACTCATCCTGATGCACTGAATGAACAACCTGTTGTAACAGCCCCGGTGACTACTGGTCATACTCATAATGACGATTTTTGGGAACAACTCTTGACGGAAAATCCTCCTTCCGCTTCGGATGATGAGACAGAACAAAGTGGATTGAATAATGATGGTTGGCCTGGTGGACTTGGCAGATAA 1155 0.4026 MMEQSNGSSSSNSSFPPFLSKTYEMVNDPSTDAIISWSDTNRSFIVWNPPVFTSDLLPKFFKHKNFSSFIRQLNTYGFRKVDQELWEYANDDFVRDQPHLMKNIHRSKPVHSHSSQNSRGQGAAAAAPITESERRNLNAEIQRLQDDKEQLLLELQRQDEEWKAKQTLLHYAKDRLEKLEQRQQTILSSVGQVLQKPRDESSLWPLTENSKRKRKFLRNIPFSNDASIEDNMETSCVLPSENAESESILSLSKGRLDLLESSLKFWENIVHDISETSFKSHSNLDFDDSMSCANSPKISCVQLDFEVQHKSPGIDTYSEPAAVIVTHPDALNEQPVVTAPVTTGHTHNDDFWEQLLTENPPSASDDETEQSGLNNDGWPGGLGR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00669 384 MobiDBLite consensus disorder prediction 355 375 - -
Trre3g00669 384 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Trre3g00669 384 MobiDBLite consensus disorder prediction 107 132 - -
Trre3g00669 384 Coils Coil 127 161 - -
Trre3g00669 384 Pfam HSF-type DNA-binding 18 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 FunFam Heat shock transcription factor 1 11 108 - -
Trre3g00669 384 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 232 IPR027725 -
Trre3g00669 384 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre3g00669 384 MobiDBLite consensus disorder prediction 355 384 - -
Trre3g00669 384 Gene3D - 10 108 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00669 Trre-Chr3 4604454 4606273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00669 6 369 HSF AT4G18880 47.439 1.88e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre3g00669 HSF_DNA-bind 8.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00669 K09419 - gmx:100820566 433.721