Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00665 ATGGCTTCAGGGGCTATTTTCTCGTCGTTGCGGCGGCGAAGATCACCGACGTTGGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGACGTTGCTTTAGTTCAGACTCTTGTAACGGTGGTGAACGAGCTTGTATCTTGTTTTTCAAAGCGTTCTTTTTTCTTTCAGAGGAAAAATACGCGTTCTTTGGTTAGAAAAGTTGAAGTTTTTCAAGTTCTTTTGGAGTATTTGAACGATTCGGGTTCATGTTCGGGTTCTGGTTTTCCACCTACAGCGTTGCTTTGTCTGAAAGAGCTTTATTTGTTGCTGTATAGGTCAAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGTTACAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACTCTTTTGGATGTTTTTCCTGTTAAGGATGTTGGTTTGAGTAAGGATGTTAGAGAACAGGTTGAGCTTTTGTTGAAGCAATCAAGGAGAGCTAAGCTATTTATAGATATGGAAGATGATGCTCTCAGGATTCGTTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCGGCCGAATTGCGTTCTTTTTATGTTGATAAGTTGCAGGTTATTGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACGATTTCGGTGCTTAAAGGGTTTGTAGCTATGACTCGGTATTGTAGGTTTTTGATTTTCGGATTTGAGGAAGATGAGCTTGATTTTGAAAATGGAAGTCAGAAGAAGAATCCTAAGAAGGGTTTGATTACTCAAGAAATTGCAGATACATTTTTAACTGTTCCAAAGGACTTTTGTTGTCCGATATCGTTGGATTTGATGAGAGACCCGGTGATTATTTCCACCGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCGAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCCCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGCAGTGCTCATGGAATCCCACTTGATCCAGTAGAAGTTATGGATGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCCGCCCTCGAAGCCAATAGAGCCACTGCAAATCTTCTCATTCAACAGCTAGCTAATGGATCACAATCTGGAAAGACTATTGCTGCTCGGGAGATTCGATTGCTTGCGAAAACCGGCAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGTGCGATTCCTTATCTTCGGAACTTATTGGCATCGCCTAATTCTGTTGCTCAGGAGAATTCAGTCACTGCTTTGCTCAACTTATCCATTTACGACAAGAACAAAAGCCGGATCATGGATGAGATAGGTTGTCTCGGATCAATTGTCGCTGTGTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAGATAATCGCAGATGAGACCGGAGCCGTTGAAGCCTTAGCAGGGCTTTTGCAAGATGGTACATCAAGAGGAAAGAAAGATGCTGTAACAGCTTTGTTCAATCTTTCCACACACACCGAGAATTGTGTTCGAATGATTGAGGCAGGAGCAGTATCAGCTCTAGTTGAGGCTTTGGGGAACGAAGGAGTTGCCGAGGAAGCAGCAGGTGCACTAGCCTTGATCGTCCGGCAGCCTTTTGGAGCCAAAGCAGTAGTCAATCAAGACGAGGCAGTAGCAGGATTAATAGGAATGATGCGTTGTGGAACACCACGAGGCAAAGAGAACGCAGTCGCAGCATTGCTCGAGTTATGCCGGAGTGGAGGTTCAGCCGCAACAGAAAGGGTGGTTAAGGCACCAGCTTTGGCCAGATTACTTCAAACCCTACTATTCACCGGGACAAAGCGAGCAAGACGAAAAGCCGCGTCACTTGCTAGAGTATTTCAAAGATGTGAAACTGCTGCATCTTTACATTATGGTGGATTAGGTGTAGGTTATGCATATGCTAGCAATTCAGCTCAAACTAGGGATACAAACTTTGTTGCGGGTGATGTTTCAGTACCTATGTCCATCTCTGTACCTGTATTATAG 2169 0.4385 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVSCFSKRSFFFQRKNTRSLVRKVEVFQVLLEYLNDSGSCSGSGFPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLLKQSRRAKLFIDMEDDALRIRFFSFLDEFENGRIPDSAELRSFYVDKLQVIDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLIFGFEEDELDFENGSQKKNPKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCSAHGIPLDPVEVMDAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLASPNSVAQENSVTALLNLSIYDKNKSRIMDEIGCLGSIVAVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTSRGKKDAVTALFNLSTHTENCVRMIEAGAVSALVEALGNEGVAEEAAGALALIVRQPFGAKAVVNQDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPALARLLQTLLFTGTKRARRKAASLARVFQRCETAASLHYGGLGVGYAYASNSAQTRDTNFVAGDVSVPMSISVPVL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00665 722 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Trre3g00665 722 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Trre3g00665 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Trre3g00665 722 Gene3D - 396 672 IPR011989 -
Trre3g00665 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Trre3g00665 722 FunFam RING-type E3 ubiquitin transferase 369 690 - -
Trre3g00665 722 PANTHER U BOX DOMAIN-CONTAINING 56 677 - -
Trre3g00665 722 SUPERFAMILY RING/U-box 281 366 - -
Trre3g00665 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Trre3g00665 722 SMART arm_5 552 590 IPR000225 GO:0005515
Trre3g00665 722 SMART arm_5 511 551 IPR000225 GO:0005515
Trre3g00665 722 SMART arm_5 426 466 IPR000225 GO:0005515
Trre3g00665 722 SMART arm_5 591 632 IPR000225 GO:0005515
Trre3g00665 722 FunFam RING-type E3 ubiquitin transferase 292 367 - -
Trre3g00665 722 Coils Coil 216 236 - -
Trre3g00665 722 CDD RING-Ubox_PUB 294 346 IPR045210 -
Trre3g00665 722 SUPERFAMILY ARM repeat 397 674 IPR016024 -
Trre3g00665 722 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Trre3g00665 722 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Trre3g00665 722 Gene3D - 27 148 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00665 Trre-Chr3 4581452 4583620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00665 1 722 U-box Gene Family AT1G29340 69.158 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00665 - - gmx:100811153 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00665 3 4581452 4583620 Trre3g00665 3 4581452 4583620 ECH