Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00661 ATGACTAGGGCTATTCGGAATAGGGTACTCAAAGATGCAAATGGTGATATTAGTGACCATCTACGCAACCATATCCATTTAACAAATTGTATTCACTTGAAGAATCATATGCACAAAAACAGTCCAATACTTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGCTGCAAAGATCTCGTTCTCTTCGGGATCCTTCTGCAAGTCCTCCATCATGGCACTCTCCTTCTGTAGTTGACTTGCTTTTCAAAAGATCTGAAAATGATGCCGCGATTCAAGGGGGTAGAAGGTCTGTTGGTAATGACAGTAAGAAGGGAGGTAGGAGATTGTCTGGAAATGGAAACTCCCCACCATTGATGAGTAAAGGTTCATCGAGAGTTGCTCCCGGTGAGGCTAGTAGGGGTTTTGATGTGGTACCGGCGGCAACTAGTGAACGAAGTAGCAGGAGCGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGCAGGAAGAGTAATAGGCCTGACTATTTGGAAGTTATTAGTCAAGATCAACTTCTTCATGAGACTGGCAAAAGTTTGGCCGAAGATGTTGTTTCGAGGCATTCTCATTCGATAGATAGAAAGAGTAGACAGAGGGGGAAGAATGTTCGAGATGTTCCAGTTAAGACTCTTTCTGAACAGCTGAATGATGTTCCTTTGGATAGTGATGATTTAGCATCATCTAACATTCATTTTCGGGCAAGATTTCCAAGACAGGAGAAAATTATTGAGGAGGCACAACACGCTAGCATGCGCGGTCATGGTAATGGATTGAATAGGGTAAAAAGGCGTAAGTTTCGAAGTGTAAGAAGAGCTCGGGTTGCTACAACGTCAAGAGATATTGGAGCTGAGAATGAATTGTCAGTGGCTTCCAACTCATTAGCTCAGGGTTCGCCTCATGAGAAATATCACTCGGAGGAGGTTGATGAGTATGCAGATGGTAATGTTACTAGGGCTCCAAAAAACGGGTGTGGCATGCCTTGGAATTGGTCAAGAATTCATCATAGAGGTAAAACATTCCTTGACATTGCTGGAAGAAGTTTATCGTGTGGTTTATCTGACTCGAGGTTAAAGAAAGGGACATCATTAACATCCAACGGAAGAAATGTTTCTGCGATGCCTTTGGCAGCTGACTGTTCTAGCTCATGTACTAACTCTGAGGCAGAGGCACTGCCTTTACTAGTTGATGCATCTGGATCTCATGGAAGCTCCGATAATGCTTGCTGGGGCCGTGATTATGCGGGCGAACTAGGTATTTATGGTGATAATTTATTCAAGCAAGATATTGATTCAGATCTTGCTTCTGAAGCTAGATCGGGTGGCCAGCATAACTTGAGACGGAATCATCATAGTAGACACCAAAGTTTAACACAAAAATATATGCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCGCAAGCTCTTTCGAATGCAGTGACGAGACGTAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAGTTCGTCGGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGAAAGAGTAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAACATCATGGATCTACTCGATAATATGATTATTTCCCAGCTTCCGTCACAGTACAGAGTGTTTATTTTCGACGATTGTGATACTCTGTCAGTAGATTGTTGGAATGCTATATCCAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGTTAAAGGATTCAGATATCGTATACACACTGGAGCGGATTGCAACCAAAGAAGGGCTAGATATTGATAAGGATGCCCTTAAACTCATTGCATCAAGGTCCGACGGATCATTGAGAGACGCTGAGATGACAATTGAACAACTTAGTTTGCTTGGGCAGAGAATTTCTGTTCCTCTTGTTCAAGAGCTGGTAGGGCTTATCTCTGACGAGAAGTTAGTGGATCTACTTGACTTGGCATTATCCGCGGACACGGTAAATACTGTGAAGAATTTGAGAATGATAATGGAAGCAGGTGTTGAACCATTAGCTTTGATGTCACAGCTTGCTACAGTAATTACTGATATACTGGCTGGGACCTATGATTTCACTAAAGAAAGACGTAGAAGGAAATTCTTCCGAAGACAACCATTGTTCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCGGAGAAGCAGTTAAGGATGTCCAATGACAAGCTAACATGGTTAACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATGGGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTCGCTCTAAATAATGGAAATGTAAAAGAAGCTACTAGAAACACCGGTAATCCTGTTGAAATTTCTAACAGAACAAGGAGAATGTCAATGGATGCTCGAATGGAAAATTCTCATGCTGGAAGTTCAGCAGATAGAAGGCATAGTGTGTCTTGTTTTGCTCCTCAACATACTTGTTCACATTCCACCAATAAGACTAGTATAAATGAAAGGCAGATTTTGGATAGAAACCGCAAAGAAATTGAAGAGATATGGTTAGAGGTGTTAGAGAGGATTCACTATCCTGGTCTCAAAGAGTTTTTGTATAAAGCAGGAAAACTAATCTTCATAAGTTTCGGGCCAGCTCCAACTGTGCAGCTAATGTTTAACTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACTGCTCACATCTTACAAGCTTTTGAATCTGTCCTTGGATCTTCTGTAACCATAGAAATAAGATGCGAGTCAAATAAAGATGGAGGCTCTCCTGTTCAACTGCCTCTTGTATTGCCTTCTGTCAATGATGGTTCATCCCAGATCAGAGACTTAAATGACGTTGGCACTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGAAGAAGAAGCTTCACATATGGAGCATAAGCATAATGAGCAGCAGGTTGATGCTCACGCAACATATAGAAGTCTAGAAGGTACAAGTACGGGACAAGTGTCAGCTTCCCAAAAAATACCGATTGTTAAGTCACATTCAGACCGAAGAAAGCTTAGTGAGAAAAATCAAAGTCGAAGTCTTGTAAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAACGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAACATCTAAAGCGACACGTCGGAAGCTGTCACACTTGAAAATCCAAAATCGAAAGACACGCGCATTGCTTAACCTTGTCTCGTGTGGGAAATGTCTCTCCACAAAATCTCCGAGGTAG 3537 0.4198 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRSENDAAIQGGRRSVGNDSKKGGRRLSGNGNSPPLMSKGSSRVAPGEASRGFDVVPAATSERSSRSGMGDGRRVGREESGRKSNRPDYLEVISQDQLLHETGKSLAEDVVSRHSHSIDRKSRQRGKNVRDVPVKTLSEQLNDVPLDSDDLASSNIHFRARFPRQEKIIEEAQHASMRGHGNGLNRVKRRKFRSVRRARVATTSRDIGAENELSVASNSLAQGSPHEKYHSEEVDEYADGNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSLSCGLSDSRLKKGTSLTSNGRNVSAMPLAADCSSSCTNSEAEALPLLVDASGSHGSSDNACWGRDYAGELGIYGDNLFKQDIDSDLASEARSGGQHNLRRNHHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVTRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRSIREVGPVSNFDFENIMDLLDNMIISQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLERIATKEGLDIDKDALKLIASRSDGSLRDAEMTIEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRMIMEAGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLFKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFNHSPFALNNGNVKEATRNTGNPVEISNRTRRMSMDARMENSHAGSSADRRHSVSCFAPQHTCSHSTNKTSINERQILDRNRKEIEEIWLEVLERIHYPGLKEFLYKAGKLIFISFGPAPTVQLMFNSQLSKSTAEKFTAHILQAFESVLGSSVTIEIRCESNKDGGSPVQLPLVLPSVNDGSSQIRDLNDVGTEKRRGEIVEEEEEASHMEHKHNEQQVDAHATYRSLEGTSTGQVSASQKIPIVKSHSDRRKLSEKNQSRSLVKSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKTSKATRRKLSHLKIQNRKTRALLNLVSCGKCLSTKSPR 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00661 1178 Coils Coil 772 799 - -
Trre3g00661 1178 NCBIfam DNA polymerase III subunit gamma/tau 462 810 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre3g00661 1178 Gene3D - 637 699 - -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 189 212 - -
Trre3g00661 1178 Pfam DNA polymerase III subunits gamma and tau domain III 692 750 IPR022754 GO:0003887
Trre3g00661 1178 MobiDBLite consensus disorder prediction 1056 1070 - -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 149 168 - -
Trre3g00661 1178 SUPERFAMILY post-AAA+ oligomerization domain-like 707 810 IPR008921 GO:0003677|GO:0006260
Trre3g00661 1178 SMART AAA_5 495 636 IPR003593 GO:0016887
Trre3g00661 1178 MobiDBLite consensus disorder prediction 89 171 - -
Trre3g00661 1178 Gene3D - 454 633 IPR027417 -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 1056 1087 - -
Trre3g00661 1178 FunFam DNA polymerase III subunit gamma/tau 637 699 - -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 1071 1086 - -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 107 121 - -
Trre3g00661 1178 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 465 869 - -
Trre3g00661 1178 CDD HLD_clamp_pol_III_gamma_tau 636 699 IPR045085 -
Trre3g00661 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 683 IPR027417 -
Trre3g00661 1178 MobiDBLite consensus disorder prediction 444 464 - -
Trre3g00661 1178 FunFam DNA polymerase III subunit gamma/tau 458 635 - -
Trre3g00661 1178 Pfam DNA polymerase III, delta subunit 479 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00661 Trre-Chr3 4558836 4564110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00661 462 760 Core DNA Replication Machinery Family AT1G21690 23.588 8.54e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00661 - - gmx:100809005 1833.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00661 3 4558836 4564110 Trre3g00661 3 4558836 4564110 ECH