Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00657 ATGGAAAGATCATCACTCTCTTCATCAGCTAAAAGGCGTGGTATAAAGAAAAGAGTGGTAGAAATTCCAATGAAAGATGTGGAAGGGACTAATACTCCACCGTCCGATTCATGGGCATGGAGAAAATACGGCCAGAAACCCATCAAAGGTTCCCCTTATCCAAGGGGATACTATAGATGTAGCAGTTCAAAGAGTTGTCCAGCAAGAAAACAAGTAGAAAGGAACCATGTGGACCCCACCGTGCTTCTTGTAACATACAGCTCCGATCATAACCACGCCGTGCCGGCACCTAGAAACTACCGCAACACAAGCAACGCCGCCGCATCAAACAAAGACTCTGAATCAGAACAAGAACCAGAAACAGAACCGGAAGAAAGGTTTACGGATCTTGGTGAGGAGCCGTTGATCTCCCCTACAGATGAGTTAGGCGGATGGTTGGGAGAAGTGGATACGATCCCGTCACCGGCGGGTCTGGAATGTCCGATTTTCTCGGAGCAGGAAGTTTCGATGTTGGGAGAAGAGGAGATGTCGTTGTTCGCGGATCTAGGAGAGTTGCCAGAGTGTTCGCCGGTGTTTTGGAGAGGGAGGAGGAGTAGCAGCGGCGCCGGCAATGTTAGTGTGGGACCACTTGTTGAGGCAAATTGCTCCTTGTGA 654 0.4954 MERSSLSSSAKRRGIKKRVVEIPMKDVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKSCPARKQVERNHVDPTVLLVTYSSDHNHAVPAPRNYRNTSNAAASNKDSESEQEPETEPEERFTDLGEEPLISPTDELGGWLGEVDTIPSPAGLECPIFSEQEVSMLGEEEMSLFADLGELPECSPVFWRGRRSSSGAGNVSVGPLVEANCSL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00657 217 SMART WRKY_cls 34 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g00657 217 MobiDBLite consensus disorder prediction 1 74 - -
Trre3g00657 217 FunFam WRKY transcription factor 65 17 95 - -
Trre3g00657 217 MobiDBLite consensus disorder prediction 97 112 - -
Trre3g00657 217 ProSiteProfiles WRKY domain profile. 35 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g00657 217 MobiDBLite consensus disorder prediction 88 147 - -
Trre3g00657 217 Pfam WRKY DNA -binding domain 36 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g00657 217 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 190 IPR044810 GO:0003700
Trre3g00657 217 Gene3D WRKY domain 22 96 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g00657 217 SUPERFAMILY WRKY DNA-binding domain 31 95 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g00657 217 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00657 Trre-Chr3 4519072 4520150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00657 4 202 WRKY Transcription Factor Family AT1G29280 48.636 2.13e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g00657 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00657 - - psat:127080568 375.555