Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00645 ATGGAGATTGGTCATCTCAATCAACTCCAAATTTTGAGATTGGGAAAGAACAACTTGAGTGGACCTATTCCTTCAAATATCCTCAACATTTCAACATTGGAAATTTTGGATCTACAAGAAAATTATCTCTCTGGCATGCTTCCATCAAATATGGGATTTGGTCTTCCTAACCTACAACACCTAGACATATATGCAAACAACCTTGTTGGAAAAATTCCAGATACTATATCCAATGCTTCAAATCTCATTCAACTTGACTTGCAAGAAAATGAATTTAGTGGAATTATACCAAATTCTTTTAAAGATTTAAGAGTCATCGAATTCCTCGGCGTAGCTAACAATAATTTGACATTAAATGATGATTCTCTTGAAATAAACTTCCTTACTTCACTTACTAGTTGCAAATATCTTGCTTATCTTGATATATCATTTAATAGGTTATCAAAACTTCCTAATTCCATTGGAAACTTATCAATAGAATTTTTTCAAGCATTTTCTTGTGGAATTAATGGAAATATTCCACTAGAAATTGGAAATATGAGCAACTTGATTCAATTATCTCTGAGTGGGAATCATTTAAATGGATCAATCCCTAGTACAATTAAAAGGTCACATCAACTTCAATATTTGAATCTTGAATTCAATGAACTGCAGGGATCTATAGTTCCTGAGCTATGTGAAGTTAGCAGTTTGAGTGAGTTGTATTTAACAAGCAATGAGCTTTCTGGTGTGTTACCAACATGCTTAGGAAACATGACTTCTCTTAGAAAGTTTCACTTGGGATATAATAAGATCACCTCAATGATACCTCTCTCTTTTTGGAATCTTGAAGATATTTTAGAGGTAAAGTTGCCATCTAATGCTTTAACTGGAAATCTTCCACCTGAGATTAAGAATTTAAGAGCTCTTATACTATTAGATCTCACCAAAAATCAAATTTCAAGCAACATTCCAACCGCCATAAGTTTATTGAGAACTTTAGAAACTCTCTCCTTAGCAAATAACAAGTTGAATGGTCCTATTCCAACATCACTTGGTGACATGTTAAGTTTGAGTTACTTGGACTTGTCTCAAAATCTTATAACTGGTGTGATTCCAAAATCATTAGAGTCACTTTCTTATCTTAAGTACATAGATTTATCATACAATAGATTGCAAGGACAGATTCCTAATGGAGGACCTTTCAAAAGCTTCACAGCTCAATCTTTTAGGCATAATGACGCGCTTTGTGGCAATCCACGCTTACAAGTACCTCCATGTGATAAACATATTAGGAAAAAATCAAAGAGAAAGATGCTATTAATCATATGCATAACATCCACATTTGTTGTGTTAGGCATTTTGGTTGTTGCATGCATAATACTTCGGAGGCATAAAAGGAAGGTTGAAAATCCACTTAAAAGTGATTTGTCAACTAATTTAGGGGCTCCAAGAAGAATATCCTACTATGAACTTGTGAAAGCAACTAATGGATTCAGTGAAAGTAATTTACTTGGAAAGGGTGGCTTTGGATCTGTGTATCAAGGAATTCTTTCTACCAGGAAGATGGTGGCAGTTAAAGTACTTGACTTGACAATGGAAGCAACATCAAGAAGCTTTGATGCAGAATGTAATGCAATGCGCAACCTTCGACATCGAAATCTTGTTCAAGTTATTAGTAGTTGTTCAAATGATGATTTCAAATCTCTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGAGAAATGGTTATACTCAGAGAACATTTGTTTGGATTTCTTACAAAGGTTGAATATAATGATAGATGTGGCATCAGCATTGGAGTATCTTCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTCGATGAAGATATGGTTGCGCGTGTTAGTGACTTTGGTATTTCCAAGCTCTTGGATGAAGGACAATCAAAAACTCATACTCAAACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTACAGCTATGGGATAATGCTAATGGAAATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATCAGTGAATCAATGGTCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGCCTCACAACATGAGAAAGAACTTCGTGAAGTTTTAGGTTTAGCTTTGAGTTGTTGTGCAGATTCACCTGAAGCAAGAATTAAAATGACCGATGTAACTGCATCGTTAATCAAAATCAAGACCTTAGTCATGCGGTGA 2301 0.3485 MEIGHLNQLQILRLGKNNLSGPIPSNILNISTLEILDLQENYLSGMLPSNMGFGLPNLQHLDIYANNLVGKIPDTISNASNLIQLDLQENEFSGIIPNSFKDLRVIEFLGVANNNLTLNDDSLEINFLTSLTSCKYLAYLDISFNRLSKLPNSIGNLSIEFFQAFSCGINGNIPLEIGNMSNLIQLSLSGNHLNGSIPSTIKRSHQLQYLNLEFNELQGSIVPELCEVSSLSELYLTSNELSGVLPTCLGNMTSLRKFHLGYNKITSMIPLSFWNLEDILEVKLPSNALTGNLPPEIKNLRALILLDLTKNQISSNIPTAISLLRTLETLSLANNKLNGPIPTSLGDMLSLSYLDLSQNLITGVIPKSLESLSYLKYIDLSYNRLQGQIPNGGPFKSFTAQSFRHNDALCGNPRLQVPPCDKHIRKKSKRKMLLIICITSTFVVLGILVVACIILRRHKRKVENPLKSDLSTNLGAPRRISYYELVKATNGFSESNLLGKGGFGSVYQGILSTRKMVAVKVLDLTMEATSRSFDAECNAMRNLRHRNLVQVISSCSNDDFKSLVMEFMSNGSVEKWLYSENICLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVARVSDFGISKLLDEGQSKTHTQTLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISESMVNSVMEVVDYNLASQHEKELREVLGLALSCCADSPEARIKMTDVTASLIKIKTLVMR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00645 766 Gene3D Ribonuclease Inhibitor 1 119 IPR032675 -
Trre3g00645 766 SMART serkin_6 492 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00645 766 Gene3D Phosphorylase Kinase; domain 1 475 567 - -
Trre3g00645 766 PANTHER OS04G0122200 PROTEIN 4 761 - -
Trre3g00645 766 SUPERFAMILY Protein kinase-like (PK-like) 473 757 IPR011009 -
Trre3g00645 766 Gene3D Transferase(Phosphotransferase) domain 1 568 764 - -
Trre3g00645 766 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Trre3g00645 766 Pfam Leucine rich repeat 56 116 IPR001611 GO:0005515
Trre3g00645 766 Pfam Leucine rich repeat 325 385 IPR001611 GO:0005515
Trre3g00645 766 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 568 766 - -
Trre3g00645 766 FunFam Serine-threonine protein kinase plant-type 472 567 - -
Trre3g00645 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Trre3g00645 766 Gene3D Ribonuclease Inhibitor 120 429 IPR032675 -
Trre3g00645 766 SUPERFAMILY L domain-like 3 217 - -
Trre3g00645 766 FunFam Leucine-rich repeat receptor protein kinase EMS1 27 121 - -
Trre3g00645 766 SUPERFAMILY L domain-like 166 413 - -
Trre3g00645 766 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 130 424 - -
Trre3g00645 766 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Trre3g00645 766 SMART LRR_sd22_2 348 374 - -
Trre3g00645 766 SMART LRR_sd22_2 252 273 - -
Trre3g00645 766 SMART LRR_sd22_2 55 81 - -
Trre3g00645 766 SMART LRR_sd22_2 6 32 - -
Trre3g00645 766 ProSiteProfiles Protein kinase domain profile. 492 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00645 766 SMART LRR_typ_2 80 102 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 6 30 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 128 157 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 228 251 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 348 371 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 252 275 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 180 204 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 55 79 IPR003591 -
Trre3g00645 766 SMART LRR_typ_2 300 324 IPR003591 -
Trre3g00645 766 Pfam Protein kinase domain 493 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00645 Trre-Chr3 4451464 4453882 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00645 2 761 Receptor kinase-like Gene Family AT3G47570 36.938 9.95e-160 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre3g00645 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00645 - K13420 mtr:25485995 1134.01