Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00643 ATGTCTTCACTTGAAGAAATCTACTTAGGAAATAACTCCTTATCAGGAGAAATTCCGAAAGGTATAGGTGATCTTGCACAGTTGAGAATGGTGAACCTTCAACATAATATGTTCAAAGGCAACATATTTATGTTCAACAACTCATTATTACAATACTTGAAACTTGGTAATAATAATTTGAGTGGCATTCTTCCATCAAATGTTTGTCAAGGGTTTCCAAACCTTAGATTATTAGATCTATACCTTAATGATTTCTATGGTGAAATGCCAAAAGTTTGGCGTTATTGCAAAGAGTTGGAAGATTTAGAGCTTTCCCAAAATAATTTTGACAAAGGACGTATGCCACTTGACATTGGAAAACTGACCAAGCTTCAATATTTGTATCTTGCTTTAACCAACTTGCAAGGTGAAATTCCATTTTCCCTCTTCAACATTTCTTCTTTAAGAGAGGTCAGCCTTGAAGGAAACAATTTAAATGGAAGTCTCTCAAATGAGATGTGCCATCAACTTCCACAACTTAGTACATTTTCTCTACGCTCTAATGATTTTGGAGGAATCATTCCACAGTCAATTGAAAATTGCACATCATTACAACATTTAAGTTTAACAGATAACTTTTTTACAGGTTCGATACCAATGGAGATTGGCAATTTCAATCAACTCCAAGTTTTGCAATTGCGAAATAACAGCTTGAGTGGACCTATTCCTTCAAAAATCTTCAACATTTCAACATTGAAATATTTGATTCTTAACCAAAATTCTCTCTCAGGCATGCTTCCATCAAATATGGGATTTGGTCTTCCTAACCTACAACGCCTAATAATATATAAAAACAACTTTGTTGGAAAAATTCCAGATAGTTTAACCAATGCTTCAAATCTCGTTGAACTTGACTTGAGTGATAATAAATTTAGTGGAATTATACCAAATTCTTTTGGAGATTTAACATTCATCGAATACCTCAGCCTAGCTAACAATAATTTGACTTTAACTGATGATTCCCTTACTTCACTTACTAGTTGCAGATATCTTGCATATCTTGTAGTATATGATAATAGGTTATCAAAACTTCCCAAATCCATTGGAAACTTGTCATCATTAGAGCACTTTTTAGCAGATTCTTGTGGAATTAATGGAAATATTCCACTAGAAATCGGAAACATGAGCAACCTCATTCGATTATCTCTGAGTCAGAATGATTTAAATGGACCAATACCTATTACAATTAAAAGGTTAGATAAGCTTCAATCTTTGAATCTTGACTACAATAGACTCCAAGGATCTATAGTTCATGAGCTTTGTGAAATTAGGAGTTTGAGTGAATTGAATTTAACAAACAATAAGCTTTTCGGAGAGTTACCGACATGTTTGGGAAATATGACTTCACTTAGAAAGTTTCACATAGAATCTAATAGGTTGACCTCTAAAATACCATCCTCTTTTTGGAATCTCAAAGATATTTTAGAGGTAAGCATATCCTCCAATGCTTTAATTGGAAATCTTCCACCTGAGATTCAGAATTTGAGAGCTCTTGTAAGATTAGATTTGTCAAGAAATCAAATTTCAAGTAACATTCCAACAACAATAAGTTTGTTGATAAATTTAGAAACTCTATCCTTAGCATATAACAAATTGGAAGGGTCTATCCCAACATCACTTGGTGGAATGTTAAGTTTGAGTTTCTTGGACTTGTCTCAAAATCTTATAGCTGGTGTGATTCCAAAATCATTAGAGTCACTTTCTTATCTTAAATACATCAATCTATCATATAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAAAAGCTTCACAGCTCAATCTTTTATGCATAATGACGCGCTTTGTGGCAATCCACGCTTACAACCTAGTAACGTTTTACTAGATGAAGATATGGTTGCACATGTTAGTGATTTTGGTATTTCCAAGCTCTTGGATGAAGGACAATCAAAAACTCATACTCAAACTTTAGCTACTCTTGGTTATGTTGCACCAGAGTATGGATCTAAAGGAGTCATTTCAGTTAAAGGAGATGTGTACAGCTATGGGATAATGCTAATGGAAATGTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTGAATCAATGGCCAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACAAGAAGAACTTCATGAAATTTTAGCTTTAGCTTTGAGTTGTTGTGCAGATTCACCTGAAGCAAGAATTAAAATGACCGATGTAACTGCATCGTTAATCAAAATCAAGACCTTAGTCATGCGGTGA 2319 0.3394 MSSLEEIYLGNNSLSGEIPKGIGDLAQLRMVNLQHNMFKGNIFMFNNSLLQYLKLGNNNLSGILPSNVCQGFPNLRLLDLYLNDFYGEMPKVWRYCKELEDLELSQNNFDKGRMPLDIGKLTKLQYLYLALTNLQGEIPFSLFNISSLREVSLEGNNLNGSLSNEMCHQLPQLSTFSLRSNDFGGIIPQSIENCTSLQHLSLTDNFFTGSIPMEIGNFNQLQVLQLRNNSLSGPIPSKIFNISTLKYLILNQNSLSGMLPSNMGFGLPNLQRLIIYKNNFVGKIPDSLTNASNLVELDLSDNKFSGIIPNSFGDLTFIEYLSLANNNLTLTDDSLTSLTSCRYLAYLVVYDNRLSKLPKSIGNLSSLEHFLADSCGINGNIPLEIGNMSNLIRLSLSQNDLNGPIPITIKRLDKLQSLNLDYNRLQGSIVHELCEIRSLSELNLTNNKLFGELPTCLGNMTSLRKFHIESNRLTSKIPSSFWNLKDILEVSISSNALIGNLPPEIQNLRALVRLDLSRNQISSNIPTTISLLINLETLSLAYNKLEGSIPTSLGGMLSLSFLDLSQNLIAGVIPKSLESLSYLKYINLSYNRLQGEIPDGGPFKSFTAQSFMHNDALCGNPRLQPSNVLLDEDMVAHVSDFGISKLLDEGQSKTHTQTLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEMFTGKKPTNEMFSEELTLKTWISESMANSVMEVVDYNLVSQQEELHEILALALSCCADSPEARIKMTDVTASLIKIKTLVMR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00643 772 SMART LRR_typ_2 508 531 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 532 555 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 292 314 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 48 71 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 1 25 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 218 242 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 460 483 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 145 169 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 412 436 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 315 338 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 267 291 IPR003591 -
Trre3g00643 772 SMART LRR_typ_2 556 579 IPR003591 -
Trre3g00643 772 SMART LRR_sd22_2 556 582 - -
Trre3g00643 772 SMART LRR_sd22_2 1 27 - -
Trre3g00643 772 SMART LRR_sd22_2 508 537 - -
Trre3g00643 772 SMART LRR_sd22_2 218 244 - -
Trre3g00643 772 SMART LRR_sd22_2 291 323 - -
Trre3g00643 772 ProSiteProfiles Protein kinase domain profile. 439 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00643 772 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 74 331 - -
Trre3g00643 772 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 337 628 - -
Trre3g00643 772 Gene3D Ribonuclease Inhibitor 331 625 IPR032675 -
Trre3g00643 772 Gene3D Ribonuclease Inhibitor 112 330 IPR032675 -
Trre3g00643 772 SUPERFAMILY L domain-like 48 343 - -
Trre3g00643 772 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 337 620 - -
Trre3g00643 772 Gene3D Transferase(Phosphotransferase) domain 1 626 772 - -
Trre3g00643 772 Pfam Protein tyrosine and serine/threonine kinase 625 762 IPR001245 GO:0004672|GO:0006468
Trre3g00643 772 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Trre3g00643 772 SUPERFAMILY RNI-like 253 598 - -
Trre3g00643 772 SUPERFAMILY Protein kinase-like (PK-like) 623 767 IPR011009 -
Trre3g00643 772 Pfam Leucine rich repeat 171 231 IPR001611 GO:0005515
Trre3g00643 772 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Trre3g00643 772 Pfam Leucine rich repeat 268 328 IPR001611 GO:0005515
Trre3g00643 772 Pfam Leucine rich repeat 462 521 IPR001611 GO:0005515
Trre3g00643 772 Pfam Leucine Rich Repeat 438 459 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00643 Trre-Chr3 4433142 4438176 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00643 623 767 Receptor kinase-like Gene Family AT5G46330 35.000 7.96e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre3g00643 PK_Tyr_Ser-Thr 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00643 - K13420 gmx:100784397 625.935