Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00639 ATGGGTCTAGATGAGAGGAAAATTAGTGTTGAGGTGTTAGATTCAGTTCATGAAGTGATTGATGAGAATTTAAGTAATTTGGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGTTGAGTAAGGATTCAGGATCCAATAAGGAGCTAAACGAGACGCCTGAGGAAGTTAAGGTTGGGGAAAAGCGCGATGAATTGCCGGTGGTTGATCAAGGAACTAGTTATAGTTCAAGCAATTTGGTTAATCAGGGTGTGGTTGAGACAGTGGTTGTAATAGATGCTGTTAATGTTCAGACTGAGGGTATGAAATTGGAAGCAAAAGCGGATGAATCAGGGCTTAGTTTGGTTTCAATGAAAGCGCCGAAAGGGGTGTGTGAAACTGATAAAGATTCATGTGTGATTGATATGAAGTGTAGTAGCCATAAAGGGTTTTATGAGAGTTCACATGGTGAAAAGATTTGTAGAATTTGTCATCTGACTTTTGGACAGTCGTCGGATGCAACAAGTGTTGAAAATGGTAGTGCTACAAGTGGTGATTTTATTCAACTCGGTTGTTCGTGTAAAGATGAGCTCGGCATTGCACATATTCATTGTGCTGAGGTGTGGTTCAAGCTCAAGGGAAACAGGTTATGCGAAATATGTGGCGAGACTGCAAAAAATGTTTCTGTTGCTACTAATAATGGATTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAATGACGGTAACTCATCCCAGCAAAGGTTTGGTGGATGCTGGCGAGGACAACCATTTTGTAATTTCTTGATGGCGTGCCTGGTAATAGCTTTCATTCTGCCATGGTTTTTTCATGTAAATATGTTCTAG 849 0.4052 MGLDERKISVEVLDSVHEVIDENLSNLVEGVGEVGTSRELSKDSGSNKELNETPEEVKVGEKRDELPVVDQGTSYSSSNLVNQGVVETVVVIDAVNVQTEGMKLEAKADESGLSLVSMKAPKGVCETDKDSCVIDMKCSSHKGFYESSHGEKICRICHLTFGQSSDATSVENGSATSGDFIQLGCSCKDELGIAHIHCAEVWFKLKGNRLCEICGETAKNVSVATNNGFMEEWNDRRFMDNDGNSSQQRFGGCWRGQPFCNFLMACLVIAFILPWFFHVNMF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00639 282 SUPERFAMILY RING/U-box 149 217 - -
Trre3g00639 282 MobiDBLite consensus disorder prediction 34 58 - -
Trre3g00639 282 PANTHER ZINC FINGER, RING-CH-TYPE 51 282 - -
Trre3g00639 282 Pfam RING-variant domain 154 214 IPR011016 GO:0008270
Trre3g00639 282 SMART ringv_2 153 215 IPR011016 GO:0008270
Trre3g00639 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 226 IPR013083 -
Trre3g00639 282 ProSiteProfiles Zinc finger RING-CH-type profile. 146 221 IPR011016 GO:0008270
Trre3g00639 282 MobiDBLite consensus disorder prediction 42 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00639 Trre-Chr3 4394656 4396391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00639 134 281 C3H Transcription Factor Family AT5G05830 39.474 1.19e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00639 - - gmx:100791720 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00639 3 4394656 4396391 Trre3g00639 3 4394656 4396391 ECH
Trre7g04714 7 54835810 54837646 Trre3g00639 3 4394656 4396391 PCT