Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00638 ATGGAAGGTGTTAAAGTGTTTTTTTGGTTTATTTTTCTATGGAATTTGGTATCATTGGTTGTTGAGGGTACTGAAAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCTATGAAGAGTAAGATGAATGATGAGTCACATGTTATGAATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTCCTGAGGGTTATGTCATTACCTTGGAAATGGCTAGTGCAGGTTTATCTGGAGTTATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCGAACACTGTTATTGCAGAACAATCAGCTATCTGGTCCTATCCCGGTTGAAATAGGAAACCTGTTAGAACTTCAGACTCTTGATCTTTCCGGTAACCAGCTTGTCGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAATAATAAACTATCTGGACTGATCCCTCAACTTGTTGCTAATCTCACAGGACTTTCGTTCTTGGATTTGTCATTCAACAATCTCAGTGGTCCTACTCCAAAAATCTTAGCAAAAGGCTATAGTATTTCAGGAAACAACTTCCTCTGTACATCATCCTCACAAATTTGTATGAGCGGTTCAAAGCCAGTAAATGATACAGGGTCATCATCTCAGACAGGCAGAAGTCATCGACATACGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTAATGCTGCTCGCCTATTGGTTACATTGGTACAAATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTGTGAATTCGGTATCGGTCATTTGAAGAGGTTCTCCTTTCGTGAATTGCAAATTGCTACTGGAAATTTCACTTCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGCCTTGCTAACAAAATGTTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACCGGAGAAGTGCAGTTTCAAACTGAAGTCGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCGTTCATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGAGAGTTTTCGTGGAAAGCCATGTTTGGATTGGAACAGGCGAATGCACATTGCTGTTGGGGCTGCACGAGGGCTTTTGTATTTGCACGAGCAGTGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGAGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTACGCGGCACTGTAGGACACATTGCTCCCGAGTATCTCTCTACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTCGGCATATTACTTTTGGAACTCATAACAGGACAAAAGGCACTGGATGCCGGAAACGTTCAAGTCCAAAAGGGAATGATTCTTGATTGGGCTAGAACTTTATTTGAGGACAAGCAACTGGAAGTGTTAGTTGATAGGGATCTAAAGGGATGTTATGATCCGTTAGAGTTAGAAAAAGCGGTCGAGTTGTCTATACAATGTACTCAGTCTCTTCCTAGTTTGAGGCCAAAGATGTCAGAAGTTTTAAAGGTTCTTGAAGGGCTTATTGGTTTGTCAATGAGGCCAGAAGAGTCACAAGGAGGGGGTAACCTATATGATGAAAGGAATTGCAGTTTCTCTCAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAACTTTCTGGACCTAGGTGA 1863 0.4101 MEGVKVFFWFIFLWNLVSLVVEGTESLLSPKGVNYEVAALMSMKSKMNDESHVMNGWDINSVDPCTWNMVGCSPEGYVITLEMASAGLSGVISSGIGNLSHLRTLLLQNNQLSGPIPVEIGNLLELQTLDLSGNQLVGNIPSSLGSLTHLSYLRLSNNKLSGLIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQICMSGSKPVNDTGSSSQTGRSHRHTVLSVVIGFSCTFVISVMLLAYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQIATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRESFRGKPCLDWNRRMHIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVQVQKGMILDWARTLFEDKQLEVLVDRDLKGCYDPLELEKAVELSIQCTQSLPSLRPKMSEVLKVLEGLIGLSMRPEESQGGGNLYDERNCSFSQNYSDVHEEPSFIIEAIELSGPR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00638 620 Gene3D Phosphorylase Kinase; domain 1 267 372 - -
Trre3g00638 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Trre3g00638 620 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Trre3g00638 620 Gene3D Transferase(Phosphotransferase) domain 1 373 574 - -
Trre3g00638 620 SUPERFAMILY Protein kinase-like (PK-like) 280 570 IPR011009 -
Trre3g00638 620 SUPERFAMILY L domain-like 35 206 - -
Trre3g00638 620 Pfam Protein kinase domain 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00638 620 FunFam Somatic embryogenesis receptor kinase 1 267 372 - -
Trre3g00638 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 568 - -
Trre3g00638 620 Gene3D Ribonuclease Inhibitor 33 213 IPR032675 -
Trre3g00638 620 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Trre3g00638 620 SMART serkin_6 297 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00638 620 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 214 - -
Trre3g00638 620 ProSiteProfiles Protein kinase domain profile. 297 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00638 620 SMART LRR_typ_2 99 122 IPR003591 -
Trre3g00638 620 SMART LRR_typ_2 147 170 IPR003591 -
Trre3g00638 620 SMART LRR_typ_2 171 194 IPR003591 -
Trre3g00638 620 SMART LRR_typ_2 123 146 IPR003591 -
Trre3g00638 620 FunFam Somatic embryogenesis receptor-like kinase 1 373 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00638 Trre-Chr3 4383533 4387051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00638 41 620 Receptor kinase-like Gene Family AT5G45780 70.396 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre3g00638 Pkinase 5.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00638 - - gmx:100810610 1091.26