Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00632 ATGGCTGACGTTCTTTCACAAAAGATCAAAACACCCACAAGCACCAACAAGAAGGAAACATCGAATCTTTTACTGGGTCGATTCGAAATTGGGAAACTTCTTGGTCATGGAACATTTGCAAAGGTTTATTATGCCAAGAACATCAAAACTGGTGAAGGTGTTGCAATCAAAGTCATTGACAAGGAGAAGATTCTGAAGGGTGGTTTAGTTGCTCATATCAAACGTGAGATCTCGATTCTTCGTCGTGTTCGTCATCCTAATATTGTTCAATTGTTTGAGGTAATGGCTACTAAAACAAAGATCTATTTTGTTATGGAATTTGTTCGTGGGGGTGAACTTTTTAATAAGGTTGCTAAGGGTAGATTGAAAGAAGAGGTTGCTAGGAAATATTTTCAACAATTGATTTCAGCTGTTGGATTTTGTCATGCTAGAGGTGTTTATCATAGGGATCTAAAACCTGAAAATTTGTTGCTTGATGAGAATGGTAATTTGAAAGTTTCTGATTTTGGTTTGAGTGCTGTTTCTGATCAAATTAGACAGGATGGTTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGTTATGATGGTGCTAAGGTTGATCTTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTACCTTTTCATGATCAAAATGTTATGGCAATGTATAAGAAGATTTATAAGGGTGATTTTAGGTGTCCTAGGTGGTTTTCGCCGGACTTGGCTAAGCTCCTTATTCGTCTTCTTGATACGAAGCCTGAAACTAGGATTGCGATTCCTGATATTATGGAGAATAAGTGGTTTAAAAAAGGGTTCAAACAAATTAAGTTTTATGTTGAAGATGATAGGCTTTGTAATATTGATGATAGTTTAGCTGACATTGATGACGATACAGCTTCTATAGCATCTGCAGCATCTGTGGCATCTTTTTCTGATTACGCAGTTTCGGAATCCGATTCTGAGGTTGAGACTAGAAGAAGAAATGCACCTTTGCCAAGACCTGCTAGTTTGAATGCTTTTGACATTATATCGTTTTCTCCTGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGTGACGAGAATAGGTTTGTGACTGCTGCACCGGTTTCGAAGATCATATCGAAATTGGAAGAGATTGCTCAATTGGTTAGGTTTACTGTAAGGAAGAAGGATTGCAGGGTTAGCTTGGAGGGTACAAGAGAAGGTGTGAAGGGACCGTTGACTATTGCTGCTGAGATATTTGAACTAACACCTACTTTGGTTGTTGTCGAGGTGAAGAAAAAAGGAGGGGACCGAGCGGAGTATGAGAGATTTTGCAATGAAGAATTGAAGCCTGGATTGCAGAATTTGGTGGCGGATGAATCAGCAACTTCTTCAGCTTTGTCAAAGCCTAAAGAGCCTACCTTACTTCGTGTGCTTTCTGAACCAGTTCACAACTTGACTTCGGATATTGAATCGGCGCACTATGTACCTGAAGAGTGA 1527 0.3916 MADVLSQKIKTPTSTNKKETSNLLLGRFEIGKLLGHGTFAKVYYAKNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYKGDFRCPRWFSPDLAKLLIRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNIDDSLADIDDDTASIASAASVASFSDYAVSESDSEVETRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDENRFVTAAPVSKIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPTLVVVEVKKKGGDRAEYERFCNEELKPGLQNLVADESATSSALSKPKEPTLLRVLSEPVHNLTSDIESAHYVPEE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00632 508 CDD STKc_SnRK3 27 281 - -
Trre3g00632 508 SUPERFAMILY Protein kinase-like (PK-like) 24 283 IPR011009 -
Trre3g00632 508 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00632 508 Pfam NAF domain 348 404 IPR004041 GO:0007165
Trre3g00632 508 ProSiteProfiles NAF domain profile. 346 370 IPR018451 GO:0007165
Trre3g00632 508 FunFam Non-specific serine/threonine protein kinase 18 326 - -
Trre3g00632 508 CDD CIPK_C 352 463 - -
Trre3g00632 508 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00632 508 Gene3D Kinase associated domain 1, KA1 348 468 - -
Trre3g00632 508 FunFam Non-specific serine/threonine protein kinase 19 107 - -
Trre3g00632 508 Gene3D Transferase(Phosphotransferase) domain 1 18 341 - -
Trre3g00632 508 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trre3g00632 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Trre3g00632 508 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 460 - -
Trre3g00632 508 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00632 508 FunFam Non-specific serine/threonine protein kinase 348 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00632 Trre-Chr3 4328291 4329817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00632 5 484 CBL-interacting serine-threonine protein kinases AT4G18700 76.327 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre3g00632 Pkinase 6.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00632 - - gmx:100814720 866.3