LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00630	ATGAAGAACCCTGTTGTAGAAAAGTTCTCTGAATTCTATGAAAAATGGGTTCTAAAGCTTGAAGAAATTCACCATGAACTTATACAAGTATCAAAGAGAAAAACAGAGTTGTTGATGATGATGAATGAACAAGAATTACAATTGCAAGTACTAGTTTCAAAAGTCACAACTCATTTGAAAGAATACTACACTGTGAAATGGGGTGCAGCACATGAAGATGTTGTTGTTTTTTTCACACCAACATGGCTTAGTCCTTTAGAAAATGCTTACCTATGGGTAACTGGTTGGAAACCTTCCTCAATTTTTCGCATGCTCGAAAAATTCGACATAACAGATGAACAGAGAAAGGAGATAGAAAAACTTAGAGTCAAGATAAAGATGGAGGAAGAGAAAGTGGAGAGAGAGATGGAGAGACAACAAGTGGCTATGGCTGATTTGAAGATAGTGGAATTGGCTAAGCTTTCATGTAGAGCAATGAAAGGTGATGCAAAAATTGATGGGTTAGTTAGTGTTGCTTTGAAAGGTGTTTTTGCTGGTTTGGAGAAAGTTATGAAAACTTCTGATTGTGCTAGACTTAAGACACTTAAAGGGGTTTTAGATATTTTAAGTCCAATTCAGTGTGTTGATTTTTTAGCTGCACATATTGGTATGCAGTTGAGGTTGAGGCAATTTGGGATGAAGATGATCACTGGATCTAATTGA	702	0.3618	MKNPVVEKFSEFYEKWVLKLEEIHHELIQVSKRKTELLMMMNEQELQLQVLVSKVTTHLKEYYTVKWGAAHEDVVVFFTPTWLSPLENAYLWVTGWKPSSIFRMLEKFDITDEQRKEIEKLRVKIKMEEEKVEREMERQQVAMADLKIVELAKLSCRAMKGDAKIDGLVSVALKGVFAGLEKVMKTSDCARLKTLKGVLDILSPIQCVDFLAAHIGMQLRLRQFGMKMITGSN	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00630	233	ProSiteProfiles	DOG1 domain profile.	6	231	IPR025422	GO:0006351\|GO:0043565
	Trre3g00630	233	Coils	Coil	111	149	-	-
	Trre3g00630	233	PANTHER	DOG1 DOMAIN-CONTAINING PROTEIN	7	228	-	-
	Trre3g00630	233	Pfam	Seed dormancy control	36	106	IPR025422	GO:0006351\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00630	Trre-Chr3	4311090	4311791	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g00630	47	222	bZIP Transcription Factor Family	AT5G06960	25.843	4.13e-13	65.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00630	-		-	psat:127115880	337.421

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre3g00630	3	4311090	4311791	Trre3g00630	3	4311090	4311791	ECH