Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00619 ATGCCGGATTTTCACGATTCTCTCTCTCCACCACCACCGCCGTCGTCTCGCCCTATCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCTACTCTCGTTGATGCATGGGGTCGTCGTTATCTCGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACTAAGAAAACTCATCGCACTGATGTTCAATGTAAGAATCGAATTGATACGATTAAGAAAAAGTATAAGATCGAGAAAGCTAGGGTTTCCAATTCTAATGGTGTTTTTTCTTCGACTTGGCCTTTTTATGAACGTTTGGATGTTTTGATTGGTCCTAATTTCAATACCAAGAAATCTACATCTTCTCCGTCACCGTCTCCACCTGTTGCTCTTCCATTGGTTCCTCATCGGAAATTTCCTAATTCGTCGTCTGCGATTTCCGTTCTTCCGGCTGCTGTTGCTCTTCCGCAGAAGAGGCCACTTGCTACGGTGATGGATGATGGTTATTTTAGGAGGAATTATTCCGCGGTTGCTGCCGCGGCTGCTGCTGCGGAGGCTGATGAAGATGAGGAGGAGGATGAAGAGGAGGAAGTTGAGGAGGAGGTTGAGGTTGAGGTTGAGGAGGAAGAAGGAAGGGGAAGTGAAGTGGATGAAGGGGATAAAGGGAAGGAAGGGATGAAAAGGTTGGCTAAGGCTATTGAGAAATTTGGTGAAATGTATGAGAGAGTTGAGGGACAGAAACTGAGGCAGATGATTGATTTGGAGAAACAAAGGATGGAGTTTGCTAAAGATATTGAAGTGCAAAGGATGCAGATGTTAATGGATACACAAGTTCAGCTGGAGAGAATCAAGCGTGGGAAACGATCTGGGTCTAATGATATGTATAGCTAG 915 0.4536 MPDFHDSLSPPPPPSSRPIPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSNSNGVFSSTWPFYERLDVLIGPNFNTKKSTSSPSPSPPVALPLVPHRKFPNSSSAISVLPAAVALPQKRPLATVMDDGYFRRNYSAVAAAAAAAEADEDEEEDEEEEVEEEVEVEVEEEEGRGSEVDEGDKGKEGMKRLAKAIEKFGEMYERVEGQKLRQMIDLEKQRMEFAKDIEVQRMQMLMDTQVQLERIKRGKRSGSNDMYS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00619 304 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00619 304 MobiDBLite consensus disorder prediction 192 222 - -
Trre3g00619 304 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 295 IPR044823 -
Trre3g00619 304 Coils Coil 185 220 - -
Trre3g00619 304 MobiDBLite consensus disorder prediction 190 234 - -
Trre3g00619 304 Gene3D - 26 92 - -
Trre3g00619 304 MobiDBLite consensus disorder prediction 1 19 - -
Trre3g00619 304 Pfam Myb/SANT-like DNA-binding domain 23 116 IPR044822 -
Trre3g00619 304 FunFam trihelix transcription factor ASIL2 26 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00619 Trre-Chr3 4227606 4232517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00619 226 303 Trihelix Transcription Factor Family AT3G14180 41.463 1.19e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre3g00619 Myb_DNA-bind_4 1.9e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00619 - - gmx:100815241 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00619 3 4227606 4232517 Trre3g00619 3 4227606 4232517 ECH