Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00605 ATGGATTTTAGCTCAGATATTTCGAGGGTAGTTTTCAATGCCACTTCATATAGCTTTGGTGCTTCAAATGTGATTTCAAGAGGTGGATTTGTATCATCAAACTCATTGGATTTGGATAGTGAGAAAGGAGAACTAGTGAAGTCTCCTCCAATAATTGGAGACAAAAAGATGTGTGATGCTAACAAAACTTTAGTTACTTTGAAGAATCATAGAGAAGCAGAGAGGAGAAGAAGGAACAAAATTAATGGTCATCTTGCTAAACTTCGTGGACTTGTGCCCTCCTCTCCAAAGATGGACAAAGCAACCTTACTAGCAGAAGTAATTAGGCAAGTGAAGGAATTGAAAAATAATGCTAATCAAGCAAGCAATGGTTATTTAATCCCAATAGATGGTAATGAAGTGAAAGTTGAAGTTGAATCATGTGAAAAGGGTGGAGTAGATGGATCAATTCTTTACAAAGCATCTATCTGCTGTGATTACCAACCAAAACTTCTTTATGATCTAAAACAAACTCTTGATACCCTTCAACTAAAATTGGTAAGGGCAGAATTGTCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTACAATTGTTGCGAAGTAGGCATTTATAATATTGAGCTATGTCAACTTATTGCAAGTAATGTTCATCAGGCACTTAGTTCTGTATTGGATAAGGCTTCTGCATCAATGGAATATTCATTAAGAGCACCACATCCTACCAATCAGCTGCAGCAGACATCTACTTTGTCATGCAACCATGATTTTTGCTCTTGTTGA 783 0.3665 MDFSSDISRVVFNATSYSFGASNVISRGGFVSSNSLDLDSEKGELVKSPPIIGDKKMCDANKTLVTLKNHREAERRRRNKINGHLAKLRGLVPSSPKMDKATLLAEVIRQVKELKNNANQASNGYLIPIDGNEVKVEVESCEKGGVDGSILYKASICCDYQPKLLYDLKQTLDTLQLKLVRAELSTLGDRVKNEFVYNCCEVGIYNIELCQLIASNVHQALSSVLDKASASMEYSLRAPHPTNQLQQTSTLSCNHDFCSC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00605 260 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Trre3g00605 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Trre3g00605 260 Coils Coil 104 124 - -
Trre3g00605 260 CDD bHLH_AtAIG1_like 62 139 - -
Trre3g00605 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 122 IPR036638 GO:0046983
Trre3g00605 260 SMART finulus 71 120 IPR011598 GO:0046983
Trre3g00605 260 Gene3D - 65 124 IPR036638 GO:0046983
Trre3g00605 260 CDD ACT_UUR-ACR-like 155 196 - -
Trre3g00605 260 PANTHER TRANSCRIPTION FACTOR BHLH30 28 233 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00605 Trre-Chr3 4115725 4118588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00605 68 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.727 2.98e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g00605 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00605 - - mtr:11425915 297.36