Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00604 ATGCCAACTCCTTCACCTTCATCATCTTCTTCTTCTATTTGGGTTTTGTCTAACATAAAACTTCAATTCTTTACTCGCATCAGAAGGTTTCTTCAATCTAAAGCAACCCGAAAGCGCTGTGACGCTTCCGATTGTTTAAACAGAGAAGAAAATACTCAAAATAAAGATGAACAGAACAAGGTTGAAAAGATTGAAACAGTTGAAGTTATGGAGAACCATAAGGAGGAGGAAGAGGTGGAGGAAACTGAAATTTTGCTGCAGAAGACAGTGAAAATGCTTCATTTTGGAAACTGGGAAGAGAAGGAGGTAGCTGCAAAAGAGATTGAAAGTTTAGTTAAAGAAGATGTTAAAGTTAGAAAGTTGATAACTGAACTTGGGGTGGTGCCGGTTTTGGTATCTATGGTGGCGTCGCAGGTGGCTAGTCGCCGGAGTGCAGGGTTGACGGCTTTGATTTACCTAGCTGATGGAACTTACACGAACAAGGCTCTGATAGTGGAGGCAGGAATATTATCCAATCTACCAAAGAAAATTGACCTTATAGATGAGTCAACCATGAGAGAGTTTGCAGAGTTACTTTTATCATTATCATCACTTGCAAATACCCAATTCCCTTTTGCTTCATTAGATTTTATGCCATTTCTTAAAGACATTCTTGAAAAAGACACAACTTTTAATACCAAAAGATCATGTTTAGGAGCCTTATACAACCTATCAACAATGTTAGAAAATGCAAGCTCTTTGGTATCTTATGGTCTTGTCCCAATTTTATTGGAACTTTCTTTAGTAAAAGAAATTTCAGAAAAAGCACTTGCTACTTTAGGTAACTTGTTGGTTACTCTAATGGGAAAAAAAGCAATAGAAAATAGTTCAATGGTGCCACAAAATTTTGTTGAAATTTTGTCATGGGAAGATAAACCAAAATGTCAAGAGTTGTCGGTTTATATTTTGATGATTTTAGCACATCAAAGTATATCACAAAGAGAGAAAATGGCACAAGCTAGGATTGTTCCTATGCTTCTTGAAGTTGTTTTATTGGGGAGTCCTTTAGCTCAAAAGAGAGCAATGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAATTAAGATGGGTCCACATTCTGGTCCACAATCACCAAGATTTGCAATGGGGTCACCTTTGAATCAAAGAGATACAAAAGAAGGGAAGAACATGATGAAGAGTTTGGTAAAACAAAGCTTGCATAAGAATTTGGAAATAATAACTCAAAGGGCAAATGCAAATGAGGAATCTTCCAAACTCAAATCATTGGTTATTAGCACAAGTTCCAAGAGTTTGCCTTATTGA 1323 0.3658 MPTPSPSSSSSSIWVLSNIKLQFFTRIRRFLQSKATRKRCDASDCLNREENTQNKDEQNKVEKIETVEVMENHKEEEEVEETEILLQKTVKMLHFGNWEEKEVAAKEIESLVKEDVKVRKLITELGVVPVLVSMVASQVASRRSAGLTALIYLADGTYTNKALIVEAGILSNLPKKIDLIDESTMREFAELLLSLSSLANTQFPFASLDFMPFLKDILEKDTTFNTKRSCLGALYNLSTMLENASSLVSYGLVPILLELSLVKEISEKALATLGNLLVTLMGKKAIENSSMVPQNFVEILSWEDKPKCQELSVYILMILAHQSISQREKMAQARIVPMLLEVVLLGSPLAQKRAMKLLQWFKDERQIKMGPHSGPQSPRFAMGSPLNQRDTKEGKNMMKSLVKQSLHKNLEIITQRANANEESSKLKSLVISTSSKSLPY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00604 440 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 440 - -
Trre3g00604 440 Gene3D - 31 427 IPR011989 -
Trre3g00604 440 SUPERFAMILY ARM repeat 87 360 IPR016024 -
Trre3g00604 440 Coils Coil 47 67 - -
Trre3g00604 440 MobiDBLite consensus disorder prediction 368 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00604 Trre-Chr3 4106330 4109271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00604 99 387 U-box Gene Family AT1G67530 29.139 4.81e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00604 - - gmx:100813828 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00604 3 4106330 4109271 Trre3g00604 3 4106330 4109271 ECH