Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00579 ATGGGTTCTGGTTTTTGGTTTAAAGCAATAATTAAGTTAAGGAAATCAAAAGATCGCACATCAAAGAAAGCAAAGGGTACTTTAGCTCCAGAGAAGCTAAGTGCATTGAAGTCGAACAACTATACAGGAAAAGAGTCTAATGGTGTAGAAAATGGTATTCAAAATGAAAATCTTGTGTCAGTCGAAACTATTGCTGCCACAAGGATCCAGACTGCGTTCCGGGCTTATAAGGCAAGAAAAGCTCTACGACGATTGAAAGGTTTCTCAAAACTGAAGATTTTAACAGAAGGTTACTCTGTTCAAAAGCAAGCCAGTACAACTATAACATACCTTCATTCATGGAGCAAGATACAAGGTGAGATTAGAGCTCGTCGAATCTGTATGGTAACAGAAGACAAGATCAGGCGGAAGAAACAAGAGTCTCAACTAAAACTCGAGGGAAAGCTCCATGATTTTGAGGTTGAATGGTCTGGCGGTCCTGAAACCATGGAGGAGACGCTTGGGAGAATACATCAAAAAGGAGAAGCAGCAGTGAAGCGAGAAAGAGCCATGGCTTACGCCTTTTCTCATCAGTGGAGGGCAAACTCTAGTCAGAGCCAAGCACTAGGTAGTTACGAGCTTGGCAAAGCTAACTGGGGTTGGAGCTGGAAGGAACGCTGGATCGCTGCTCGTCCATGGGAAAGCCGTGTCGCTGACATTAGCCCCAAAAAAGTTCAAAATAAGCAGTCATTCAAAGTTCAAAAGGATAAAAACACATCAAAATCTAAAACTTCAGTTTCAGTTACACCTTCTCCCTCCAATGCAAAAGGGACTACTCCTAAAGGAAGTACCAAAGCTAGGAGATTGTCTTATCCAACCACAGAGAAAGAGAAAACTGTAGTTGAAGGAGTGAAGTGA 897 0.4225 MGSGFWFKAIIKLRKSKDRTSKKAKGTLAPEKLSALKSNNYTGKESNGVENGIQNENLVSVETIAATRIQTAFRAYKARKALRRLKGFSKLKILTEGYSVQKQASTTITYLHSWSKIQGEIRARRICMVTEDKIRRKKQESQLKLEGKLHDFEVEWSGGPETMEETLGRIHQKGEAAVKRERAMAYAFSHQWRANSSQSQALGSYELGKANWGWSWKERWIAARPWESRVADISPKKVQNKQSFKVQKDKNTSKSKTSVSVTPSPSNAKGTTPKGSTKARRLSYPTTEKEKTVVEGVK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00579 298 MobiDBLite consensus disorder prediction 253 282 - -
Trre3g00579 298 PANTHER IQ-DOMAIN 5-RELATED 1 267 - -
Trre3g00579 298 ProSiteProfiles IQ motif profile. 62 90 IPR000048 GO:0005515
Trre3g00579 298 MobiDBLite consensus disorder prediction 237 298 - -
Trre3g00579 298 MobiDBLite consensus disorder prediction 283 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00579 Trre-Chr3 3957290 3959628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00579 1 285 IQD Protein Family AT2G33990 52.281 4.33e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00579 - - var:108341135 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00579 3 3957290 3959628 Trre3g00579 3 3957290 3959628 ECH