Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00574 ATGAATTTTTATACTCAAACATCAAACTCAGTTCCAAATATTTTGCTTTGTCTTCCTCTAATAATCATGCTTTTCCTATTCCATTGTCATGCAAATAGTTCCCAAAATACAACAAGTATTGGTGTGATCATTGATGTTAATTCTGAAACAGGGAAACAACAGAGAACAGCCATGCAAATTGCAGCTCAAAGTTTCAACAATTATTCCAACAATCAAAACATAATCCTTTTCTTCCGTGACTCTAGTAGAAACCCTTTACAAGCAGCTTCAGATGCTGAAGAATTAATTACTAAAGAAAAAGTTAAAGTGATTATTGGCATGGACACATGGCAAGAAGCAGCTCTTGTTGCTGATCTTGGAGCCAAGTTTCAAATACCAACAATATCATTTTCTTCTCCACCGTTAGTCTCTTCATCATTAATGCAACTTCGTTGGCCTTTCTTAATTCAAATGGCACAGAATCATTCTGCACAAATGAACTTCATAGCTAATATGATCGATGCTTTGAACTCTCAGCAAGTTATAGCTATATACGAGAACAACCCTTATAGTACTGATTCTGGAATGTTAAGCCTCTTATCCGAGGCTCTCCAAAAGGTAAACTCACAGATTGAGTATCACTTAGTTCTTCCACCATCCACTTCATTATCTGATCCAAAAGGGTTTGTTCTTCATGAATTGTTGAAGTTGCTGTCATTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGATTCATCTTGGATAATCAGTGAGGAGATTGCAAGCATGTTGGACTATGTAGATAAATCTGTTTTATCTTCTATGGAAGGTGTTTTGGGAATCGAAACCAACTATTCTACAAGTTCTAGTGCTTCAACTCAATTGCAGAAAATTTTTCAACCTGGATCAAATGTCTTGCTAGCTTATGATAGCATTACAATTGTCACAAAAGCTTTGGAGAAAATGAAAACTAATTCTAGTATCTCAAAGATGTTATTGGAGGAAATTTTATCTTCCAATTTCAATGGTTTAATTGGCGATATAAGATTCAAAGAAAGACAACTATCCTACACTCCAATATTAAGAGTCATTAAAGTGGTTGATAATGATAAGAAACATATGGAATCGGACTTTTGGACACCAAAGTCGAAGTTTGCTAGATCTCTTAGTGAGAAAACAAGTGATGGAACTATTAAAAGCGTAAATGACTCTGTACACAAGACATGGAAAATACCTACAAAGACAAACCCTTTAAAAGTTGCCATTCCTATGTATGCTTCATCTGATAACTTTTTGAAAGTCTCTCAAAATCAAACTGCTACTGGTTTTTGTATTGATCTTTTCAATGAGATCCGAGAAATTCTGAGTGACCAGTATTCCGGTCTTCCCTATAGATTTTACCCTTTAAATGCATCTTATGATTCAATTCTGCTAAAAGTCATAGATGAGACCTATGATGCTATTGTAGCAGATATGACAATACTTGCTGACCGATCAAGGAATCTATCATTCACTCAACCATATACTGAGTCAGGCTTATCACTGATGTTTCCTGTTGAAACTGAAGATTCAGCATGGTTGTTTATGAGACCATTTAGCTGGGAAATGTGGATTGCAACTATTGGTATACTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCGCTTGAATCCTGAATTTGGTGGACCATTGAAAACCCAGATCAGCAACACTTTGTGGTTTGCTTTTTCCTCTCTATTTTCTGTTCATAGGGAGAAAATAAACAGCAACTCAGCAAGAGTAGTAGTTGGTGTATGGTTATTTCTTGTGTTGGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCCAAAATTGAGGTCTGATAGAAACATTGAATGGCTTAAACAAAACAATCTACCAATTGGTTGTGCTAGCACCAGTGCCTTTGTAAGGAACTACTTGATCCAAGTATATAATTTCCCTAGGCAGCAAATTGTTGATGTTGAGGATGAACGTGACTCAATGGTTAAATTCAAGAACAAAAAAATTGCGGCTATCTTTGCTGAGAGCCCGTATGTGAAGGTTTTCTTGAATAAACACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGTTTGGGATTTGTATTTCAGAAGGGAGCACCAATAGAAAAAGACTTTTCTGAAGCAATTTTAACACTAGCAGAAAATGGAAAACTAAAAGCTTTGGAAGACAAATGGTTAACACCTTCCAATCAATGCTCAAACAACTCACCATCTCCACAAACTCAGAGCCTGACCCTTAATAAATTTTGGGGAATCTATTTAATATGTGCTGCCACTTCCACCATCTGCTTAATACTAGCTTCATTGAAGAAGTACTTACATAATGGAAATGTAATTGCGGAATATGATGATAATAAAGGTAATCAAAACTGGACTGGACTGGATCGTCCGGTTCAACCTGTTGAATTTGGAACCGAATATGCATCTGGTCCGATCAACACTTCAAACCGCTATGCATCTGGTCCGATCAACACTTCAAACCGCTATGCATCCGGTCCGATCAACACTTCAAATCGCTATGATAACACTTCAAATCGCTATGATACAGAACTGAGTATAAAACCAGTATGA 2685 0.3631 MNFYTQTSNSVPNILLCLPLIIMLFLFHCHANSSQNTTSIGVIIDVNSETGKQQRTAMQIAAQSFNNYSNNQNIILFFRDSSRNPLQAASDAEELITKEKVKVIIGMDTWQEAALVADLGAKFQIPTISFSSPPLVSSSLMQLRWPFLIQMAQNHSAQMNFIANMIDALNSQQVIAIYENNPYSTDSGMLSLLSEALQKVNSQIEYHLVLPPSTSLSDPKGFVLHELLKLLSLKSRVFIVLQASLPMVNHLFREAKKIGLLEKDSSWIISEEIASMLDYVDKSVLSSMEGVLGIETNYSTSSSASTQLQKIFQPGSNVLLAYDSITIVTKALEKMKTNSSISKMLLEEILSSNFNGLIGDIRFKERQLSYTPILRVIKVVDNDKKHMESDFWTPKSKFARSLSEKTSDGTIKSVNDSVHKTWKIPTKTNPLKVAIPMYASSDNFLKVSQNQTATGFCIDLFNEIREILSDQYSGLPYRFYPLNASYDSILLKVIDETYDAIVADMTILADRSRNLSFTQPYTESGLSLMFPVETEDSAWLFMRPFSWEMWIATIGILIYTMIIIWFLEHRLNPEFGGPLKTQISNTLWFAFSSLFSVHREKINSNSARVVVGVWLFLVLVLTSSYTANLSSLLTVPKLRSDRNIEWLKQNNLPIGCASTSAFVRNYLIQVYNFPRQQIVDVEDERDSMVKFKNKKIAAIFAESPYVKVFLNKHCKDYTATTAAYKFGGLGFVFQKGAPIEKDFSEAILTLAENGKLKALEDKWLTPSNQCSNNSPSPQTQSLTLNKFWGIYLICAATSTICLILASLKKYLHNGNVIAEYDDNKGNQNWTGLDRPVQPVEFGTEYASGPINTSNRYASGPINTSNRYASGPINTSNRYDNTSNRYDTELSIKPV 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00574 894 PIRSF IGluLR_plant 10 855 IPR017103 -
Trre3g00574 894 FunFam Glutamate receptor 158 317 - -
Trre3g00574 894 SMART GluR_14 432 766 IPR001320 GO:0015276|GO:0016020
Trre3g00574 894 SUPERFAMILY Periplasmic binding protein-like I 33 384 IPR028082 -
Trre3g00574 894 Pfam Ligand-gated ion channel 766 796 IPR001320 GO:0015276|GO:0016020
Trre3g00574 894 Pfam Bacterial extracellular solute-binding proteins, family 3 449 765 IPR001638 -
Trre3g00574 894 Gene3D - 35 211 - -
Trre3g00574 894 Gene3D - 683 771 - -
Trre3g00574 894 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 813 IPR015683 -
Trre3g00574 894 SUPERFAMILY Periplasmic binding protein-like II 420 765 - -
Trre3g00574 894 Gene3D - 425 538 - -
Trre3g00574 894 Gene3D - 265 369 - -
Trre3g00574 894 Gene3D - 539 677 - -
Trre3g00574 894 Pfam Receptor family ligand binding region 55 377 IPR001828 -
Trre3g00574 894 MobiDBLite consensus disorder prediction 852 886 - -
Trre3g00574 894 FunFam Glutamate receptor 538 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00574 Trre-Chr3 3902602 3906571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00574 29 804 Ion Channels AT2G29120 31.966 7.85e-122 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00574 - - mtr:11441834 1195.26