Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00573 ATGAATTTTTATGCTCAAACTTTGAATTCACCTCCAAATATTTTGCTTTGGCTTTCTCTAATAATCTCACTTTTACTTTTCCAATGTGTTGCCAATAGTTCTCAAACTACAAGTGTTGGTGTTATTATTGATGTTAATTCTGAAACAGGGAAACAACAGATAAAAGCCATGCAACTTGCAGCTCAAAGTTTCAATAATTATTCCAACAATCAAAACATAATTCTTTTCTTTCGTGACTCTAGTAGAAACCCTTTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAAGAGAAAGTTAAAGTGGTTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTAACATTGGAGAAAAGTTTCAAGTACCAACAATTTCATTTTCTTCTCCTCCATTAGTCTCCTCATCATCAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCACAAAATCATTCCGCACAAATGAACTTCATAGCTGATATGATCCATGCTTTCAACTCTAAAAAAGTTATAGCTATATATGAAGACAACCCTTATAGTAGTGATTCTGGAATGTTAAGCCTCTTATCTGAGGCTCTCCAAAAGGTTAACTCGCAGATTGAGTATCGATTAGTTCTTCCGCCGTTCACTTCTTTGTCTGATCCAAAAGGGTTTGTTCTTGATGAATTGTTGAAGTTGTTGCCGTTAAAATCTCGTGTTTTTATCGTATTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTTTTGGAGAAAGATTCATCTTGGATAATCAATGAGGAGATTACAAGCATGTTGGACTATGTCGATAAATCTGTTTTATCTTCTATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACAAGCTCTAGTGCTTATACTCAATTGTGTGAAAATTTGCAAGCTGAGCATACAGAAAAAGTTGATTCCAAACCAGGATCAAATGTTTTGCTGGCTTATGATAGCATTTCAATTGTCACAAAGGCTTTAGAGAAAATGAATACTAATTCTAGTACCTCAAAGATGTTATTGGAGGAAATGTTATCTACAAATTTCAGTGGCTTATTTGGAGATATAAGATTCAAAGAAAGACAACTATCCTACACTCCAATATTAAGAGTCAATGAAGTTGTTGATAATGATAATAAATATATTGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGCTAGATCTCTTAGTGAGAAAACAAGTGATGGTACTACAGAAACTAAGACATGGAAAGTACCTACAGTTACAAACCCTTTAAAAGTTGCACTTCCTATGAATCCTGCATTTGATAACTTTTTGAAATTCTCTGATAATCAAACACCTACCGGTTTTTGTATTGATCTTTTTAAAGAGATTCGAGAAATTCTAAGTGACCAGTATTCTGGTCTTCCATATAGATTTGAACCCTTCAATGAAACTTATGATACGCTTCTGTTTAAAGTCATAAATGAGTCCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCGACCGATCAAGGAATGTATCATTCACTCAACCATATACTGAGTCGGGCTTATCACTCATATTTCCTGCAGAAAATGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGTACCGAAATGTGGATTGCAACTGCTGGTATCCTCATCTATACAATGTTTATCATTTGGTTCGTGGAACATCACTTGAATCCTGAATTTGGCGGACCATTGAAAACTCAGATCAGCACCACTCTGTGGTTTGCTTTTACTTCTCTATTTTTCGCTCATAGGGAAAACATAAGCACCAACACAGCAAGAGTAGTAGTTGCAGTATGGTTTTGTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTACTTACTGTCCAAAAATTGAGGTCAGAGAGAGACATTGAATGGCTTAAACAAACTAAACTACCAGTTGGTTGTGATAACAGCAGTACCTTTGTAAAGGATTACTTGGTCCAAGTGTATAATTTCCCTAAGGACCAAGTTGTAGATGTTGATAATGAACAAGACATTGTGGATAAATTCAAGAGCAAAACAATTTCTGCTCTTTTTGTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAATACTGCAAAGATTATACTGGAACTACAGCTGCCTTTAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGCTCCAATAGCAAGAGACTTTTCTGAGGCCATTCTAACACTAGCAGAAAATGGAAGATTAAAAGCCTTGGAAGAGATTTGGTTAACACCTTCTAATAAATGCTCAAACAACTCAGCTTCACCAGAAACTGAGAGTCTGACTCTTGACAAATTTTGGGGACTTTATGTCATATGTGCTGCCACTTCCACCATCTGCTTAGGACTAGCCTTATTGAAGAATTATCTCCATAAACATAACCACTTTGAAAATGAAGCTCATCAACTTCCTCAAAGAGATGTCATCGCTGAATCTGATGATGATAATAATAATAATAATAATAATAATGATCTGAAGAAAGCATCAAGATATGGTAGAGTATTACATAATGGGAATCTCACGACTTTAAATAAATCTGCAACTTTTGGAGGAAGTGCAATACAAGGTGTACGTCGTAGAAATTCACCAAGGTTGGAGGGTGTAATCATTTCTGATGAACCGGGCAATCCACAACGCGTCCAATCAGCCTCCCAATCAGCTGTCATAGAAATGATGTAA 2751 0.3573 MNFYAQTLNSPPNILLWLSLIISLLLFQCVANSSQTTSVGVIIDVNSETGKQQIKAMQLAAQSFNNYSNNQNIILFFRDSSRNPLQAASAAEELITKEKVKVVIGMETWQEAALVANIGEKFQVPTISFSSPPLVSSSSMQLRWPFLIQMAQNHSAQMNFIADMIHAFNSKKVIAIYEDNPYSSDSGMLSLLSEALQKVNSQIEYRLVLPPFTSLSDPKGFVLDELLKLLPLKSRVFIVFQASLPMVNHLFREAKKIGFLEKDSSWIINEEITSMLDYVDKSVLSSMEGVLGIKTNYSTSSSAYTQLCENLQAEHTEKVDSKPGSNVLLAYDSISIVTKALEKMNTNSSTSKMLLEEMLSTNFSGLFGDIRFKERQLSYTPILRVNEVVDNDNKYIELDFWTPKLKFARSLSEKTSDGTTETKTWKVPTVTNPLKVALPMNPAFDNFLKFSDNQTPTGFCIDLFKEIREILSDQYSGLPYRFEPFNETYDTLLFKVINESYDAIVGDVTILADRSRNVSFTQPYTESGLSLIFPAENEDSAWLFMKPFSTEMWIATAGILIYTMFIIWFVEHHLNPEFGGPLKTQISTTLWFAFTSLFFAHRENISTNTARVVVAVWFCLVFVLTSSYTANLSSLLTVQKLRSERDIEWLKQTKLPVGCDNSSTFVKDYLVQVYNFPKDQVVDVDNEQDIVDKFKSKTISALFVESPYEKVFLNKYCKDYTGTTAAFKFGGMGFVFQKGAPIARDFSEAILTLAENGRLKALEEIWLTPSNKCSNNSASPETESLTLDKFWGLYVICAATSTICLGLALLKNYLHKHNHFENEAHQLPQRDVIAESDDDNNNNNNNNDLKKASRYGRVLHNGNLTTLNKSATFGGSAIQGVRRRNSPRLEGVIISDEPGNPQRVQSASQSAVIEMM 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00573 916 MobiDBLite consensus disorder prediction 899 916 - -
Trre3g00573 916 Pfam Receptor family ligand binding region 55 375 IPR001828 -
Trre3g00573 916 FunFam Glutamate receptor 157 322 - -
Trre3g00573 916 Pfam Bacterial extracellular solute-binding proteins, family 3 450 768 IPR001638 -
Trre3g00573 916 SMART GluR_14 435 769 IPR001320 GO:0015276|GO:0016020
Trre3g00573 916 Gene3D - 542 676 - -
Trre3g00573 916 Pfam Ligand-gated ion channel 769 799 IPR001320 GO:0015276|GO:0016020
Trre3g00573 916 Gene3D - 711 775 - -
Trre3g00573 916 Gene3D - 153 388 - -
Trre3g00573 916 Gene3D - 429 541 - -
Trre3g00573 916 Gene3D - 45 380 - -
Trre3g00573 916 SUPERFAMILY Periplasmic binding protein-like II 423 768 - -
Trre3g00573 916 SUPERFAMILY Periplasmic binding protein-like I 35 393 IPR028082 -
Trre3g00573 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 836 IPR015683 -
Trre3g00573 916 PIRSF IGluLR_plant 10 872 IPR017103 -
Trre3g00573 916 MobiDBLite consensus disorder prediction 834 854 - -
Trre3g00573 916 FunFam Glutamate receptor 541 671 - -
Trre3g00573 916 MobiDBLite consensus disorder prediction 892 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00573 Trre-Chr3 3897604 3901577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00573 20 819 Ion Channels AT2G29120 31.622 8.60e-127 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00573 - - mtr:11441834 1342.79