Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00572 ATGAATTTTTGTGATCAAAATTCAAACTCATTTCCGAATCTTTTGCTTTGTCTTCCACTAATAATCTCGCTTCTTCTATTCCAATGTGTTGCCAATAGTTCTCAAACTACAAGTGTTGGTGTTATCATTGATGTTAATTCTGAAACAGGGAAACAACAGATAAAAGCCATGCAACTTGCAGCTCAAAGTTTCAACAATCATTCAAACAATCAAAACATAATCCTTTTCTTCCGCAAATCTACTAGAAACTCGTTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAAGAGGAAGTTAAAGTGATTATTGGTATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAGTTTCAAATACCAATAATTTCATTTTCTTCTCCTCCATTATTAGTCTCTTCATCATCATTGCAACTTCGTTGGCCTTTCCTGATTCAAATGGCACAAAATCATTCCACACAAATGAACTATATAGCTGATATTGTCCATGCTTTAAACTCTCAGAAGGTTATAGCTATATATGAAGACAACCCTTATAGTAGCGATTTTGGAATGTTAAGCCTCTTAACCGAGGCTCTCGAAAAGGTTAACTCGCAGATTGAGTATCAATTAGTTCTGCCACCATTCAGTTTTTTATCTCATCCAAAATGGTTTGTTCTTGACGAATTGTTGAAGTTGTTGCCGTTGAAATCTCGTGTTTTTATTGTACTGAAAGCATCATTACCTATGGTGAATCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGATTCATCTTGGATAATCACTGAGGAAATTACAAGCATGTTAGATTACATAGATAAATCTGTTTTATCTTCTATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACTAGGTCTAGTGCTTATACTCAATTGTGTGAAAATTTCAAAGCTGAGCATACAGAAAAAGTTGAGTCCATACCAGGATCAAAGGTTTTGCTAGCATATGATAGCATTTCAATTGTCACAAAGGCTTTAGAGAAAATGAATACCAAGTCAATTAGTTCAAAGATGTTATTGGAGGCAATGGTATCTTCTAATTTCAATGGCTTAATTGGTGATATAAGATTCAAAGAAAGACAGCTATCCAACACTCCAATATTAAGAGTCATAAAAGTAGTTGTTAATGATAAGAAACTTATGGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGCTGCAAGTGATGGTACTACAGAAACTAAGACATGGAAAGTACCTACTCATAAAAACCCTTTAAAAGTTGCAATTCCTATGTATCCCTCAGGGGATAAATTTTTGAAAGTCTCTCCAAATCATTCTGCTACCGGTTTTTGTATTGATCTTTTCAATGATATCCGAGAAATTTTGAGTGACAAGTATTCCGGTCTTCCCTATAGATTTTACCCTTTAAATGCATCTTATGATTCAATTCTGCTAAAAGTCATAGATGAGACCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCGAGAGATCAAGGAATGTATCATTCACTCAACCATATACCGAGTCGGGCTTATCACTCATATTTCCTGCAGAAAATGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGCTGGGAAATGTGGGGTGCAACTATTGGAATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCACTTGAATCCTGAATCTGCAGGTGGACCATTGAAAAACCAGATCAGCACCACTATGTGGTTTACTTTTTCTTCTCTATTTTTTGTTCATAGGGAGAAAATAATCAGAAACTCAGCAAAATTTGTAGTTGGAGTATGGTTATTTCTTGTGTTGGTTCTATCCTCATGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCAAAAATTGAGGTCAGAGAGAGACATTGAATGGCTTAAACAAAATAAACTACCAGTTGGTTGTGCTAACAAGAGTACCTTTCTAAAGGACTACTTGATCCAAGTGTATGATTTCCCTACCGTTCAAGTTGTAGATGTCGAGAATGAACAAGACATTGTTGATAAATTCAAGAGCAAGAAAATTTCTGCTCTCTTTACTGAGAGTCCATATGCGAAGGTTTTCTTGCATAAACACACCAAAGGTTACACTGCAACTACAGCAGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGCTCCAATAGCAAGAGACTTTTCTGAGGCCATTCTAAGACTAGCAGAAAATGGAAGACTAAAAGCTTTGGAAGAGTATTGGTTAACACCTTCTAATAAATGCTCAAACAAATCAGCTTCACCAGAAACTGAGAGTCTGACTCTTGACAAATTTTGGGGACTCTATGTCATGTGTGCTGCCACTTCCACCATCTGCTTAGGACTAGCCTTATTGAAGAATTATTTCCGTAAACATAACCACTTTGTAGATGAAGCTCATCAACTTCCTCAAAGAGATGTAATTGCCAAATCTGATGACGATAATAATAATAATAATAATAATAATAATAATAATAATAGTGATTTGAAGAAAGCATATAGATATGGTAGCGGATTACATAATGGGAATCTCAGGATTTTAAATAAATCTGCAACTTTTGGAGGAAGTGTAACACAAGGTGTACGTCGTAGAAATTCGCCAAGGTTGGAGAGTGTAATCATTTCTGATGAACTGCACAATCCACAACGCGCCCAATAA 2721 0.3569 MNFCDQNSNSFPNLLLCLPLIISLLLFQCVANSSQTTSVGVIIDVNSETGKQQIKAMQLAAQSFNNHSNNQNIILFFRKSTRNSLQAASAAEELITKEEVKVIIGMETWQEAALVADLGAKFQIPIISFSSPPLLVSSSSLQLRWPFLIQMAQNHSTQMNYIADIVHALNSQKVIAIYEDNPYSSDFGMLSLLTEALEKVNSQIEYQLVLPPFSFLSHPKWFVLDELLKLLPLKSRVFIVLKASLPMVNHLFREAKKIGLLEKDSSWIITEEITSMLDYIDKSVLSSMEGVLGIKTNYSTRSSAYTQLCENFKAEHTEKVESIPGSKVLLAYDSISIVTKALEKMNTKSISSKMLLEAMVSSNFNGLIGDIRFKERQLSNTPILRVIKVVVNDKKLMELDFWTPKLKFAASDGTTETKTWKVPTHKNPLKVAIPMYPSGDKFLKVSPNHSATGFCIDLFNDIREILSDKYSGLPYRFYPLNASYDSILLKVIDETYDAIVGDVTILAERSRNVSFTQPYTESGLSLIFPAENEDSAWLFMKPFSWEMWGATIGILIYTMIIIWFLEHHLNPESAGGPLKNQISTTMWFTFSSLFFVHREKIIRNSAKFVVGVWLFLVLVLSSCYTANLSSLLTVQKLRSERDIEWLKQNKLPVGCANKSTFLKDYLIQVYDFPTVQVVDVENEQDIVDKFKSKKISALFTESPYAKVFLHKHTKGYTATTAAYKFGGMGFVFQKGAPIARDFSEAILRLAENGRLKALEEYWLTPSNKCSNKSASPETESLTLDKFWGLYVMCAATSTICLGLALLKNYFRKHNHFVDEAHQLPQRDVIAKSDDDNNNNNNNNNNNNSDLKKAYRYGSGLHNGNLRILNKSATFGGSVTQGVRRRNSPRLESVIISDELHNPQRAQ 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00572 906 Gene3D - 154 405 - -
Trre3g00572 906 SUPERFAMILY Periplasmic binding protein-like II 412 764 - -
Trre3g00572 906 SMART GluR_14 428 765 IPR001320 GO:0015276|GO:0016020
Trre3g00572 906 Pfam Receptor family ligand binding region 55 389 IPR001828 -
Trre3g00572 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 839 IPR015683 -
Trre3g00572 906 MobiDBLite consensus disorder prediction 830 852 - -
Trre3g00572 906 Gene3D - 423 536 - -
Trre3g00572 906 Pfam Bacterial extracellular solute-binding proteins, family 3 447 764 IPR001638 -
Trre3g00572 906 Gene3D - 704 771 - -
Trre3g00572 906 Gene3D - 56 381 - -
Trre3g00572 906 MobiDBLite consensus disorder prediction 834 852 - -
Trre3g00572 906 Pfam Ligand-gated ion channel 765 795 IPR001320 GO:0015276|GO:0016020
Trre3g00572 906 FunFam Glutamate receptor 536 667 - -
Trre3g00572 906 SUPERFAMILY Periplasmic binding protein-like I 35 393 IPR028082 -
Trre3g00572 906 FunFam Glutamate receptor 158 323 - -
Trre3g00572 906 Gene3D - 537 668 - -
Trre3g00572 906 PIRSF IGluLR_plant 9 873 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00572 Trre-Chr3 3893080 3896713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00572 20 815 Ion Channels AT2G29120 31.127 1.45e-117 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00572 - - mtr:11441834 1239.17