Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00571 ATGAATTTAGATAAAAAAGTTATATCGATTGGTGTGATCGTTGATGGAGATTCTCGTATTGGGAAAGAACAAGAAGTAGCCATGGATATTGCAGCCAAGAGTTACAAAAACACTTCAAAGAACCACAAATTGGCTCTCTATTTTCGGAACTCCACCAAGGATACCCTCGGAGCCATCACACTTGCTGAAGAGATGATTAATGTGCAAAAGGTGCAAGCAATTATAGGGATGCACACATGGCCAGAAGCAGCTATAGTGGCTGAAATGGGAAGCAAAGCTCAAGTTCCTGTCATATCCTTTGCAGCACCTATCATAACGCCGCCATTGATGAAAGCTCGATGGCCTTTTCTAGTGAGAGTAGCTAACAATGGTACAGCATATATAAATTGTATTGCAGAAGTAGTGCAGGCTTATAGCTGGAAGAGAGTAGTAGTAATCTACGAAGATGACGGATTTGGTGGAGATTATGGGATGCTATCCCTACTAGCTGAGGCACTTCAGGATGTGGATTCAATGATAGAGCGCCGCTTAGCCCTTCCCCCAATTTCTTCTCTGCATGATCCAGGAGAGCTAGTTAGTGAAGAGATGCTTAAGTTAAAACAAACACAATCTCGGGTTTTCATAGTGCTGCAATCATCATTAGAAATGGCAATTCATGTGTTCAAAGAAGCTTCAAAAGTTGGACTAGTGGATACAGAATCAGTTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGATTCTGTCAATAAATCTGCTATTTCCTACATGGAAGGAGCATTAGGAATTAAAAACTACTACTCAGAAAGAAGAAAGGAGTATCAAGAATTTGAGGCTCAGTTCCGGAAAACATTTTCATTAAAGAATCCTGAAGAAGATAACCGATACCCCGGATTTTATGCTCTACAAGCATATGATAGCATTAATATTGTAACTCAAGCAATCAACAGAATGACCAATATGAATAATATCAGCTCAAAGACTTTACTAAGAGAAATAATGTCTAGCAATTTCCTTGGTTTAAGTGGTCATATTCAACTCGAAGCCGGACAACTCATGCAGAAGAATCGTGTCTTAAGAATTGTAAATGTGGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCAACAACGCGGTTTCACTAAAATACTCCATGCCGGACAAAGTAAGGTTGCTAGAAGTACAGAATGTTTCAAGGGTGTACGGTGGCCTGGGAATTTGGACCACGATCCAAAGGGCTGGAACATGCCTACCAAAACAAATCCGTTGAAAATTGCAGTCAGAAGTAGAACCTCCTTTTCCAGATTTGTCAAGGTTGAGTATGGCCAGAATCAAATGCCTGATAAATATAGTGGATTCTGCATTGAAATTTTTGAGCATGTACTTAAACTTTTGGGATACGATCTTCCATATACTTATTCTCCCATCGATGGAACCTATAACGATTTGGTTCAGCTTGTCTATAACAAGACTTACGACGCAGTTGTTGGGGACATGACCATAATAGAGGAAAGATTGCAGTATGTGGATTTTACAGTACCATATGCAGAATCAGGATTGACAATGATAGTTCCAATGAAGACTAAAGAATCAGCATGGATGTTTATGAAGCCATTTACCTGGGAATTATGGATGGTTTCATATGCAATCTTGATTTACACAATGTTAGTTGTCTGGTATCTCGAGCGAGAACCTAACCCCGAGTTTCATGGAAACTGGAAGCTCCAACTCAGCACAGCTGTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAGAGAAAAAATGCATAGCAACTTAACTCGAGCGGTGATGGTGTCGTGGCTCTTTCTTGTATTCATTCTCACATCAAGCTACACAGCTAGTCTTTCTTCGATGCTCACAGTTAAACAGTTGCGACCTAATGTCACGGACATTCAGTGGCTGAAGAACAACGATAAGAAAATTGGTTGTGATGGCGACTCATTTGTAAGGACGTTCTTAGAGAAAGTTGAAAAGTTCAAGCCAGAGAATATTATAAACATTACCGATGAATACAAGTATGATGAAGCATTTGCGAATAACAGCATAACAGCTGCATTTTTTGAGCTCCCGTACGAAAAAGTATTCATCAGTGAATACTGCAAGAGATACACCGGCTTCACGCCTAGAAATAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCTCCTCTAGCCAGAGATGTTTCGAAAGCTATATTATATCTTTCGGAAAATGCAGAACTGAAGAGATTGGAAGAAAAGTGGTTAATTAACTCACAAGATTGCTCCAACAACGTGACATCCTCCAACGATACGGATAGTTTGAATCTTGGAAGCTTATGGATTCTATATGTCACCTCTTGTGCCACATCTACTATTTGTCTGCTAATATCAATCATCCAGCGTCTAAAATCCAATGGCACACCAAGTGATGAAAGAGTGTGGAACAAGGTTCTTACATTTGCAAAACAGATTTATAGCAAAAAGCTCGATAATTCGAGTAAGGAACAGGATGTAATCGACTGTTCTTCCAGATCCGGTCATGTGAGCATCGCTGATAGCCCCCAACATTCACAAGAATTCGCTTCTCCGCCAAAAGAGGTACATATGACAAGTTCAAGTGTACATCACATGACATAG 2649 0.4002 MNLDKKVISIGVIVDGDSRIGKEQEVAMDIAAKSYKNTSKNHKLALYFRNSTKDTLGAITLAEEMINVQKVQAIIGMHTWPEAAIVAEMGSKAQVPVISFAAPIITPPLMKARWPFLVRVANNGTAYINCIAEVVQAYSWKRVVVIYEDDGFGGDYGMLSLLAEALQDVDSMIERRLALPPISSLHDPGELVSEEMLKLKQTQSRVFIVLQSSLEMAIHVFKEASKVGLVDTESVWIIPESITNLLDSVNKSAISYMEGALGIKNYYSERRKEYQEFEAQFRKTFSLKNPEEDNRYPGFYALQAYDSINIVTQAINRMTNMNNISSKTLLREIMSSNFLGLSGHIQLEAGQLMQKNRVLRIVNVAGKSYKELCFWTQQRGFTKILHAGQSKVARSTECFKGVRWPGNLDHDPKGWNMPTKTNPLKIAVRSRTSFSRFVKVEYGQNQMPDKYSGFCIEIFEHVLKLLGYDLPYTYSPIDGTYNDLVQLVYNKTYDAVVGDMTIIEERLQYVDFTVPYAESGLTMIVPMKTKESAWMFMKPFTWELWMVSYAILIYTMLVVWYLEREPNPEFHGNWKLQLSTAVWFTFSSLFFAHREKMHSNLTRAVMVSWLFLVFILTSSYTASLSSMLTVKQLRPNVTDIQWLKNNDKKIGCDGDSFVRTFLEKVEKFKPENIINITDEYKYDEAFANNSITAAFFELPYEKVFISEYCKRYTGFTPRNRFGGLGFMFQKGSPLARDVSKAILYLSENAELKRLEEKWLINSQDCSNNVTSSNDTDSLNLGSLWILYVTSCATSTICLLISIIQRLKSNGTPSDERVWNKVLTFAKQIYSKKLDNSSKEQDVIDCSSRSGHVSIADSPQHSQEFASPPKEVHMTSSSVHHMT 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00571 882 Gene3D - 425 532 - -
Trre3g00571 882 MobiDBLite consensus disorder prediction 849 882 - -
Trre3g00571 882 FunFam Glutamate receptor 533 671 - -
Trre3g00571 882 CDD PBP1_GABAb_receptor_plant 9 385 IPR044440 -
Trre3g00571 882 CDD GluR_Plant 422 759 - -
Trre3g00571 882 Pfam Bacterial extracellular solute-binding proteins, family 3 448 759 IPR001638 -
Trre3g00571 882 Gene3D - 16 354 - -
Trre3g00571 882 SUPERFAMILY Periplasmic binding protein-like I 6 415 IPR028082 -
Trre3g00571 882 FunFam Glutamate receptor 423 534 - -
Trre3g00571 882 Pfam Receptor family ligand binding region 26 353 IPR001828 -
Trre3g00571 882 Gene3D - 533 670 - -
Trre3g00571 882 PIRSF IGluLR_plant 1 881 IPR017103 -
Trre3g00571 882 SUPERFAMILY Periplasmic binding protein-like II 404 760 - -
Trre3g00571 882 SMART GluR_14 423 761 IPR001320 GO:0015276|GO:0016020
Trre3g00571 882 Gene3D - 671 766 - -
Trre3g00571 882 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 805 IPR015683 -
Trre3g00571 882 Gene3D - 123 378 - -
Trre3g00571 882 Pfam Ligand-gated ion channel 760 791 IPR001320 GO:0015276|GO:0016020
Trre3g00571 882 FunFam Glutamate receptor 127 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00571 Trre-Chr3 3882506 3885624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00571 8 806 Ion Channels AT2G29120 33.373 1.33e-142 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00571 - - gmx:100818619 1291.56