Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00570 ATGCATGACCTTTCAACTATTCCTCAAGTACTTACAAGTATTTGTCTATTATTTTTCTTACTCATCCCTTTTGTTCTCATTCATGGTATCCAAGGCGAGACCATGAATTTAGATAAAAAAGTTATATCGATTGGTGTGATCGTTGATGGAGATTCTCGTATTGGGAAAGAACAAGAAGTAGCCATGGATATTGCAGCCAAGAGTTACAAAAACACTTCAAAGAACCACAAATTGGCTCTCTATTTTCGGAACTCCACCAAGGATACCCTCGGAGCCATCACACTTGCTGAAGAGATGATTAATGTGCAAAAGGTGCAAGCAATTATAGGGATGCACACATGGCCAGAAGCAGCTATAGTGGCTGAAATGGGAAGCAAAGCTCAAGTTCCTGTCATATCCTTTGCAGCACCTATCATAACGCCGCCATTGATGAAAGCTCGATGGCCTTTTCTAGTGAGAGTAGCTAACAATGGTACAGCATATATAAATTGTATTGCAGAAGTAGTGCAGGCTTATAGCTGGAAGAGAGTAGTAGTAATCTACGAAGATGACGGATTTGGTGGAGATTATGGGATGCTATCCCTACTAGCTGAGGCACTTCAGGATGTGGATTCAATGATAGAGCGCCGCTTAGCCCTTCCCCCAATTTCTTCTCTGCATGATCCAGGAGAGCTAGTTAGTGAAGAGATGCTTAAGTTAAAACAAACACAATCTCGGGTTTTCATAGTGCTGCAATCATCATTAGAAATGGCAATTCATGTGTTCAAAGAAGCTTCAAAAGTTGGACTAGTGGATACAGAATCAGTTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGATTCTGTCAATAAATCTGCTATTTCCTACATGGAAGGAGCATTAGGAATTAAAAACTACTACTCAGAAAGAAGAAAGGAGTATCAAGAATTTGAGGCTCAGTTCCGGAAAACATTTTCATTAAAGAATCCTGAAGAAGATAACCGATACCCCGGATTTTATGCTCTACAAGCATATGATAGCATTAATATTGTAACTCAAGCAATCAACAGAATGACCAATATGAATAATATCAGCTCAAAGACTTTACTAAGAGAAATAATGTCTAGCAATTTCCTTGGTTTAAGTGGTCATATTCAACTCGAAGCCGGACAACTCATGCAGAAGAATCGTGTCTTAAGAATTGTAAATGTGGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCAACAACGCGGTTTCACTAAAATACTCCATGCCGGACAAAGTAAGGTTGCTAGAAGTACAGAATGTTTCAAGGGTGTACGGTGGCCTGGGAATTTGGACCACGATCCAAAGGGCTGGAACATGCCTACCAAAACAAATCCGTTGAAAATTGCAGTCAGAAGTAGAACCTCCTTTTCCAGATTTGTCAAGGTTGAGTATGGCCAGAATCAAATGCCTGATAAATATAGTGGATTCTGCATTGAAATTTTTGAGCATGTACTTAAACTTTTGGGATACGATCTTCCATATACTTATTCTCCCATCGATGGAACCTATAACGATTTGGTTCAGCTTGTCTATAACAAGACTTACGACGCAGTTGTTGGGGACATGACCATAATAGAGGAAAGATTGCAGTATGTGGATTTTACAGTACCATATGCAGAATCAGGATTGACAATGATAGTTCCAATGAAGACTAAAGAATCAGCATGGATGTTTATGAAGCCATTTACCTGGGAATTATGGATGGTTTCATATGCAATCTTGATTTACACAATGTTAGTTGTCTGGTATCTCGAGCGAGAACCTAACCCCGAGTTTCATGGAAACTGGAAGCTCCAACTCAGCACAGCTGTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAGAGAAAAAATGCATAGCAACTTAACTCGAGCGGTGATGGTGTCGTGGCTCTTTCTTGTATTCATTCTCACATCAAGCTACACAGCTAGTCTTTCTTCGATGCTCACAGTTAAACAGTTGCGACCTAATGTCACGGACATTCAGTGGCTGAAGAACAACGATAAGAAAATTGGTTGTGATGGCGACTCATTTGTAAGGACGTTCTTAGAGAAAGTTGAAAAGTTCAAGCCAGAGAATATTATAAACATTACCGATGAATACAAGTATGATGAAGCATTTGCGAATAACAGCATAACAGCTGCATTTTTTGAGCTCCCGTACGAAAAAGTATTCATCAGTGAATACTGCAAGAGATACACCGGCTTCACGCCTAGAAATAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCTCCTCTAGCCAGAGATGTTTCGAAAGCTATATTATATCTTTCGGAAAATGCAGAACTGAAGAGATTGGAAGAAAAGTGGTTAATTAACTCACAAGATTGCTCCAACAACGTGACATCCTCCAACGATACGGATAGTTTGAATCTTGGAAGCTTATGGATTCTATATGTCACCTCTTGTGCCACATCTACTATTTGTCTGCTAATATCAATCATCCAGCGTCTAAAATCCAATGGCACACCAAGTGATGAAAGAGTGTGGAACAAGGTTCTTACATTTGCAAAACAGATTTATAGCAAAAAGCTCGATAATTCGAGTAAGGAACAGGATGTAATCGACTGTTCTTCCAGATCCGGTCATGTGAGCATCGCTGATAGCCCCCAACATTCACAAGAATTCGCTTCTCCGCCAAAAGAGGTACATATGACAAGTTCAAGTGTACATCACATGACATAG 2751 0.3988 MHDLSTIPQVLTSICLLFFLLIPFVLIHGIQGETMNLDKKVISIGVIVDGDSRIGKEQEVAMDIAAKSYKNTSKNHKLALYFRNSTKDTLGAITLAEEMINVQKVQAIIGMHTWPEAAIVAEMGSKAQVPVISFAAPIITPPLMKARWPFLVRVANNGTAYINCIAEVVQAYSWKRVVVIYEDDGFGGDYGMLSLLAEALQDVDSMIERRLALPPISSLHDPGELVSEEMLKLKQTQSRVFIVLQSSLEMAIHVFKEASKVGLVDTESVWIIPESITNLLDSVNKSAISYMEGALGIKNYYSERRKEYQEFEAQFRKTFSLKNPEEDNRYPGFYALQAYDSINIVTQAINRMTNMNNISSKTLLREIMSSNFLGLSGHIQLEAGQLMQKNRVLRIVNVAGKSYKELCFWTQQRGFTKILHAGQSKVARSTECFKGVRWPGNLDHDPKGWNMPTKTNPLKIAVRSRTSFSRFVKVEYGQNQMPDKYSGFCIEIFEHVLKLLGYDLPYTYSPIDGTYNDLVQLVYNKTYDAVVGDMTIIEERLQYVDFTVPYAESGLTMIVPMKTKESAWMFMKPFTWELWMVSYAILIYTMLVVWYLEREPNPEFHGNWKLQLSTAVWFTFSSLFFAHREKMHSNLTRAVMVSWLFLVFILTSSYTASLSSMLTVKQLRPNVTDIQWLKNNDKKIGCDGDSFVRTFLEKVEKFKPENIINITDEYKYDEAFANNSITAAFFELPYEKVFISEYCKRYTGFTPRNRFGGLGFMFQKGSPLARDVSKAILYLSENAELKRLEEKWLINSQDCSNNVTSSNDTDSLNLGSLWILYVTSCATSTICLLISIIQRLKSNGTPSDERVWNKVLTFAKQIYSKKLDNSSKEQDVIDCSSRSGHVSIADSPQHSQEFASPPKEVHMTSSSVHHMT 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00570 916 Gene3D - 567 704 - -
Trre3g00570 916 FunFam Glutamate receptor 161 329 - -
Trre3g00570 916 Pfam Receptor family ligand binding region 60 387 IPR001828 -
Trre3g00570 916 Gene3D - 705 800 - -
Trre3g00570 916 PIRSF IGluLR_plant 9 915 IPR017103 -
Trre3g00570 916 Gene3D - 459 566 - -
Trre3g00570 916 Pfam Ligand-gated ion channel 794 825 IPR001320 GO:0015276|GO:0016020
Trre3g00570 916 Gene3D - 50 388 - -
Trre3g00570 916 FunFam Glutamate receptor 567 705 - -
Trre3g00570 916 SUPERFAMILY Periplasmic binding protein-like II 438 794 - -
Trre3g00570 916 SUPERFAMILY Periplasmic binding protein-like I 40 449 IPR028082 -
Trre3g00570 916 CDD GluR_Plant 456 793 - -
Trre3g00570 916 Gene3D - 157 412 - -
Trre3g00570 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 839 IPR015683 -
Trre3g00570 916 MobiDBLite consensus disorder prediction 883 916 - -
Trre3g00570 916 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Trre3g00570 916 Pfam Bacterial extracellular solute-binding proteins, family 3 482 793 IPR001638 -
Trre3g00570 916 FunFam Glutamate receptor 457 568 - -
Trre3g00570 916 SMART GluR_14 457 795 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00570 Trre-Chr3 3882506 3885726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00570 8 840 Ion Channels AT2G29120 32.910 2.25e-144 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00570 - - gmx:100818619 1318.14