Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00568 ATGGAGAATATTCACATTTATAATAGTAATAATCATGATGCAACTTCTGAAGGGTCAATTCTTGAGAATGTATGGGCTAAAATTATAAGCAATAATGATGGAAGAAGTACTACAAATGAAAATGAAGCAGAATGTTCCAACACATGGGAAGAATTGCCTAATCTCGGCGAAAGAGACGGTTCGATAGAAATTCTTCAAAGATTGCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTTTGGGAACAAGTTTTAGATGCTACTATTCTACCTACAACTACTACTACTTCAATAAGCTATACAGAAGATTATAGCAACAAAAATAATGAAATTGAAAGTGTTGATAAATCAAAGAAAAAAGTGGAAAGTGGTGTGAGAAAAGAGAAAAAAATAGTTGAAAAACATTATAGAGGTGTAAGGAGAAGACCATGGGGAAAATATGCAGCTGAGATAAGAGATTCGTCGAAGAAAGGCGCGAGAGTTTGGCTTGGTACATTTGATACAGGTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTAAGAATTAGAGGTTCAAAAGCATGTCTAAATTTTCCAATTGAGAAAGTTACAAATATAAATGCAAATACAAAGAGAGAAAGTTTATTGGATTCTAAGAAGAGAGGATTAAGGGAAAGAGGAGAAGTTGTTGATGTGATGAATATTGAAGAACCTACAACAAAAAAGATGGCTGCAGAATTGGAAGATATGTTAGAAAATGATGTTTTTGTATTTCAGGATTTAGGGATTGATTACTTGGACAGTTTGTTGTCTTCTTTTTGA 807 0.3346 MENIHIYNSNNHDATSEGSILENVWAKIISNNDGRSTTNENEAECSNTWEELPNLGERDGSIEILQRLPSLGRWISMGADFWEQVLDATILPTTTTTSISYTEDYSNKNNEIESVDKSKKKVESGVRKEKKIVEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTGEEAALAYDKAALRIRGSKACLNFPIEKVTNINANTKRESLLDSKKRGLRERGEVVDVMNIEEPTTKKMAAELEDMLENDVFVFQDLGIDYLDSLLSSF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00568 268 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Trre3g00568 268 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Trre3g00568 268 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Trre3g00568 268 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Trre3g00568 268 PANTHER DNA-BINDING DOMAIN 109 233 IPR044808 GO:0003700|GO:0009873
Trre3g00568 268 CDD AP2 135 195 IPR001471 GO:0003700|GO:0006355
Trre3g00568 268 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Trre3g00568 268 FunFam Ethylene-responsive transcription factor 2 135 196 - -
Trre3g00568 268 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677
Trre3g00568 268 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00568 Trre-Chr3 3853381 3854187 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00568 17 268 AP2-EREBP Transcription Factor Family AT4G18450 36.991 9.11e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre3g00568 AP2 4.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00568 - - mtr:11443318 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00568 3 3853381 3854187 Trre3g00568 3 3853381 3854187 ECH