Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00567 ATGGTTTCATTTTCACAATCCCAAACAGAATTACCCTTAAATGAAAATGACTCACAAGACATGGTCATATACCAAGTCCTAAACGAAGCTAACAATCTAACCAACACATTTGTGCAACAGAGGAATCACCATCAAGCTTTGAGTGGCTTAGAACCTACAAGGGCTATCACAAAGAAGCATTATAGAGGTGTAAGGCGCCGTCCGTGGGGGAAATATGCCGCGGAGATTCGTGACTCGGCTCGTCATGGAGCTAGAGTATGGCTTGGAACTTTTCAAACAGCTGAAGAAGCTGCTATGGCTTATGATAGAGCTGCTTTCAAAATGAGAGGTTCTAAGGCTTTGCTTAATTTTCCAGCTGAAATTGTTGCTGCAGCTTCTATGCAAATGGAATTGTCCAATTCTAAGCTCAACTTGAATAATAGTAATCATGATTCTGAATCAAGTGGTAGCAGTTGTTGTACCAATTCTAATTCCAATAGGACTACCCAGTTTGAAAGCACAGGGGAGCAAGAAAAGAAAGAAGATTAA 528 0.4072 MVSFSQSQTELPLNENDSQDMVIYQVLNEANNLTNTFVQQRNHHQALSGLEPTRAITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAAASMQMELSNSKLNLNNSNHDSESSGSSCCTNSNSNRTTQFESTGEQEKKED 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00567 175 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Trre3g00567 175 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Trre3g00567 175 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 FunFam Ethylene-responsive transcription factor 2 59 120 - -
Trre3g00567 175 PANTHER DNA-BINDING DOMAIN 44 160 IPR044808 GO:0003700|GO:0009873
Trre3g00567 175 MobiDBLite consensus disorder prediction 136 175 - -
Trre3g00567 175 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Trre3g00567 175 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00567 Trre-Chr3 3849649 3850176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00567 4 121 AP2-EREBP Transcription Factor Family AT5G47220 50.725 1.37e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g00567 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00567 K13433 - gmx:100811533 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00567 3 3849649 3850176 Trre3g00567 3 3849649 3850176 ECH