Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00564 ATGGCTTCATCTAACAGACACTGGCCAAGTATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAACATGACATCAACTCTTCTCTCATCTCTTCTTCTGCTTGCCACAGAACTCCTTATTCAGGTGAGGAAAGAAGTGCTGAACCGAAACCGAGGTGGAATCCGAAACCGGAACAAATCCGGATACTTGAAGCAATCTTCAACTCTGGCATGGTGAATCCACCAAGAGAAGAAATAAGGAAAATCAGAGCACAGTTACAAGAATATGGACAAGTTGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGGAAATCAAGAAGCAAACATAAGCTTCGACATCTTCAAAACCAGAACTCTAAGAATCAGAACCAGAATCTGCAGAATCAGAACCTGCAGAATCAGAATCAAGAACATCCACCACAACATAACAACTCTGTTTCATCACTTTCTCAAATCACTACTGCACCTTCATCTTCATCATCCTCTTCTGAGAAATCTCCACCAAAAGAATTAATACCTTCTAAGGTATTTTCTCTTGGTTTCACTAACATCAATGATGTTGTGCCAAATTCTCCAACTGCTTCTGTGAATCAAAACTATTTTCATCCTCAAAATGAAACCAATCTTCTTCCAACACCACAAGTAACTGCACCTACTGAAACTTTCTTCTTCCCTGTGCAAAATCATGTACTACCTACTACTAATAATGTTACATCACAAGGTTTTTGTTTCTCTGAACTTTCCAATATGGTTCATCAGCCACAACAAAACAACACTGCTCATTGCACTGCTGGTTTTCCTTTTAGTGAGATCATGAACAACCTTGGTTCTAATTCCTTAAAGAAAGAACAAGTTCAGGACAAGAATGTTAAGATAATGCACCAAACTCCACCTTTTAACTTCTGTTTTGCACCCTCAACTACTATTGTTGCACCTCCCACCACTTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAAGTTCAAGGCATTGGAGAAACTGGTGTTCCTGCAAGATCAATGGTATTCATCAATGATGTGGCATTTGAGGTAGCATCTGGACCTTTCAATGTTCGTCAAGCATTTGGTGATGATGTTGTTCTCATCAATTCAACTGGTCAACCTGTTTTAACAAACCAATGGGGTGTCACTCTCCATTCTCTCCAGCATGGTGCATGTTATTATCTTGTTTGA 1206 0.3972 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSGEERSAEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNSKNQNQNLQNQNLQNQNQEHPPQHNNSVSSLSQITTAPSSSSSSSEKSPPKELIPSKVFSLGFTNINDVVPNSPTASVNQNYFHPQNETNLLPTPQVTAPTETFFFPVQNHVLPTTNNVTSQGFCFSELSNMVHQPQQNNTAHCTAGFPFSEIMNNLGSNSLKKEQVQDKNVKIMHQTPPFNFCFAPSTTIVAPPTTSSTITVPSPIISQVQGIGETGVPARSMVFINDVAFEVASGPFNVRQAFGDDVVLINSTGQPVLTNQWGVTLHSLQHGACYYLV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00564 401 MobiDBLite consensus disorder prediction 43 58 - -
Trre3g00564 401 MobiDBLite consensus disorder prediction 136 171 - -
Trre3g00564 401 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 401 IPR044557 GO:0003700|GO:0050793
Trre3g00564 401 FunFam WUSCHEL-related homeobox 11 52 119 - -
Trre3g00564 401 MobiDBLite consensus disorder prediction 136 174 - -
Trre3g00564 401 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
Trre3g00564 401 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Trre3g00564 401 Gene3D - 43 112 - -
Trre3g00564 401 MobiDBLite consensus disorder prediction 36 58 - -
Trre3g00564 401 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Trre3g00564 401 SMART HOX_1 50 117 IPR001356 GO:0003677
Trre3g00564 401 CDD homeodomain 51 113 IPR001356 GO:0003677
Trre3g00564 401 Coils Coil 117 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00564 Trre-Chr3 3825777 3828153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00564 223 401 Wox Gene Family AT5G45980 32.474 5.38e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre3g00564 Homeodomain 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00564 - - pvu:PHAVU_006G179900g 475.707