Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00561 ATGAAACAACAACATAAAGTGTTTCCTCTTCTGGTGCTGCTTCTTTTCCAAGTTGTGATTGTTTCATCACAGACAAATAATGGAGATTTAACTGCTCTTTCATCTCTGGTACAATCATGGAAAAACAAACCATTAAATTGGGTTGGTGATCCTTGTGGAAATGGTTGGAACGGAATTCGTTGCACAAATTCAAGAATTACCGAATTGAAACTAGCTGGATTGAGTTTGGAGGGTCAACTATCTTCAGCAATCCAGTCCTTATCGGAACTCGTAACGCTGGATCTTTCATACAACACAGGCATTACAGGAACAATTCCACGAGAAATTGGAAATTTGAAAAACCTTGATTCCTTGGCATTGGTTAAATGCGGTTTCTCTGGCCCTATTCCAGATACAATAGGATCTTTGAAGAAGCTGACATTTTTGGCACTGAATTCGAACAAGTTGAATGGAAATATTCCGCACTCTCTTGGAAATCTAGCGATCCTTGATTGGTTAGATCTTGATGATAACCAACTTGAAGGGCCTATTCCTGTCTCTAATGATCAAGGACAATCGGGTTTGGACATGCTCCATTTGGCGAAGCACTTTCATTTAGGGAACAATAAACTCTCAGGTCCGATACCATCACAACTTTTTAATTCCAGCATGATACTAAAACATGTGCTTTTCGACCACAATCAACTAAATGGCAGTATTCCTAGCACCCTTAGCAGCCTTGTGAGCACACTAGAAGTGGTGCGCTTTGACAACAATCAATTAAGCGGTACAGTACCTTCCAGCTTGAACAATCTCGAAAAACTTAGCGAGCTCTATTTATCACACAATCAACTGAACGGCTCTCTTCCGGATCTTACTGGAATGAATAGTCTCACCACCGTGGATCTGAGTGACAATAGCTTCAATTCATCTACTATTCCTTCATGGGTTTATACTCCTAGTCTGACAAATCTGGTAACAGTAATACTGAAGGACAATCAGCTCGGTGGCACATTAAATATCAGCGGTGGCTACAGAAAAAGTCTGCAACTCATTGATTTGCAAAACAATCGTATTACCGACTTCGTGTTTGGAAACCAAAAATGGAATTTTGACTTGAGACTGGCTCAAAATAATAGAGTTTGTCTTGAAAATGGAGTTTCTGATGAGAGTTACTGCAAAGCTCCCCAAGCCATTCCCCCATATTCAACATCGCCAAATGGTTGCTCGCCTCCTTCGTGCAGTAACGATCAGATTTCCAGCCCCAACTGTAAATGCGCATTTCCCTATATTGGAAATCTATCATCCAGAGCTTTTAGTGTCTCAAACTATAGTGACACGAGTTACTACAAAGAAATCGAGCGAACTCTGCTAGATACTTTCCGAAAACAAAATATTCCGGTGGATTCAGTTTCTCTGAGTAATCCTATCAAGGTTGCATCTACTGATAATTTTCAGTTGACTCTTAATGTCTTCCCTTCTCAAACCGATCGTTTCAATACAACTGGAGTTTCAAGTGCTGCTTTTGTTCTTAGCAACCAAATTTACGACCCTCCATCATATTTCACCCCTTACGTCTTCATTGGTAGTCGCTATCAATATTATGGAGGAGAACCTAAAGGATCAAAGTCATCACATACTGGGGCTATAGTTGGTGCAGTAGTTGCTGTATTGGTCATTCTTGTACTGGCAGTCATCATAGGATTATACGTCATGAGCAAGAAAAGAAAAGCAAGATCTTCCGAGGGGAACCCTTTTGTAAACTGGGATCAGAACAAGAATAGTGGAGCTGCTCCTCAGTTGAAAGGAGCGCGATGGTTTTCATTTGATGACATGAGGAAATACACTAACAATTTCGCAGAAGCAAACACTATCGGATCAGGAGGCTATGGACAGGTTTACCAAGGTGCTCTTCCCACTGGGGAATTGGTTGCAATCAAAAGGGCTGGAAAAGAATCTATGCAGGGAGCTGTTGAATTTAAAACTGAGATTGAACTTCTATCGAGGGTCCATCATAAGAATCTCGTTAGTCTTGTCGGCTTCTGTTACGAGAAAGGTGAACAAATGTTGGTCTATGAGTACGTTCCAAACGGCACTTTATTGGATAGTCTTTCAGGAAAATCTGGGATATGGATGGATTGGATAAGGAGGCTCAAAGTTACGTTGGGTGCCGCCAGGGGTCTGACCTATCTACATGAACTTGCTGACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAATCACCTCGTCGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTACTGATAGCGATAGGGGCCATGTTACTACTCAAGTCAAAGGAACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAATTGACTGAAAAGAGTGATGTATATAGCTTTGGAGTGCTAATGTTGGAACTAGCAACATCAAGAAAGCCAATAGAGCAAGGAAAATATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGAGTTATACAACCTTCATTCCATTATAGATCAAAGTCTACTCAAAGCGGCGAGACCTATAGGTTTAGAAAGGTATGTGGAGCTAGCATTGAGGTGTGTCAAAGAATATGCAGCTGAGAGACCTTCAATGGCCGAGGTTGCAAAAGAGATCGAAAGCATAATCGAGCTTGTTGGAGTGAATCCGGATTCGGAATCAGCTCCAACAACAGAAACTTATGTGGATGCAGGTGCTGGGGATGGTAAACATCCTTATGCGAATGACGATGAGTTTGAATATAGTGGAATGTTTCCAACAACAAGGGTAGATCCTCAATGA 2808 0.411 MKQQHKVFPLLVLLLFQVVIVSSQTNNGDLTALSSLVQSWKNKPLNWVGDPCGNGWNGIRCTNSRITELKLAGLSLEGQLSSAIQSLSELVTLDLSYNTGITGTIPREIGNLKNLDSLALVKCGFSGPIPDTIGSLKKLTFLALNSNKLNGNIPHSLGNLAILDWLDLDDNQLEGPIPVSNDQGQSGLDMLHLAKHFHLGNNKLSGPIPSQLFNSSMILKHVLFDHNQLNGSIPSTLSSLVSTLEVVRFDNNQLSGTVPSSLNNLEKLSELYLSHNQLNGSLPDLTGMNSLTTVDLSDNSFNSSTIPSWVYTPSLTNLVTVILKDNQLGGTLNISGGYRKSLQLIDLQNNRITDFVFGNQKWNFDLRLAQNNRVCLENGVSDESYCKAPQAIPPYSTSPNGCSPPSCSNDQISSPNCKCAFPYIGNLSSRAFSVSNYSDTSYYKEIERTLLDTFRKQNIPVDSVSLSNPIKVASTDNFQLTLNVFPSQTDRFNTTGVSSAAFVLSNQIYDPPSYFTPYVFIGSRYQYYGGEPKGSKSSHTGAIVGAVVAVLVILVLAVIIGLYVMSKKRKARSSEGNPFVNWDQNKNSGAAPQLKGARWFSFDDMRKYTNNFAEANTIGSGGYGQVYQGALPTGELVAIKRAGKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCYEKGEQMLVYEYVPNGTLLDSLSGKSGIWMDWIRRLKVTLGAARGLTYLHELADPPIIHRDIKSSNILLDNHLVAKVADFGLSKLLTDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATSRKPIEQGKYIVREVMRVMDTSKELYNLHSIIDQSLLKAARPIGLERYVELALRCVKEYAAERPSMAEVAKEIESIIELVGVNPDSESAPTTETYVDAGAGDGKHPYANDDEFEYSGMFPTTRVDPQ 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00561 935 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Trre3g00561 935 FunFam Leucine-rich repeat protein kinase family protein 580 687 - -
Trre3g00561 935 SUPERFAMILY L domain-like 43 375 - -
Trre3g00561 935 SUPERFAMILY Protein kinase-like (PK-like) 598 893 IPR011009 -
Trre3g00561 935 Gene3D Transferase(Phosphotransferase) domain 1 688 896 - -
Trre3g00561 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Trre3g00561 935 FunFam Leucine-rich repeat protein kinase family protein 184 284 - -
Trre3g00561 935 Gene3D Phosphorylase Kinase; domain 1 582 687 - -
Trre3g00561 935 ProSiteProfiles Protein kinase domain profile. 612 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00561 935 Pfam Protein kinase domain 614 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00561 935 FunFam Leucine-rich repeat family protein 28 182 - -
Trre3g00561 935 CDD STKc_IRAK 618 884 - -
Trre3g00561 935 SMART serkin_6 612 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00561 935 ProSitePatterns Protein kinases ATP-binding region signature. 618 644 IPR017441 GO:0005524
Trre3g00561 935 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 688 897 - -
Trre3g00561 935 PANTHER RECEPTOR-LIKE PROTEIN 55 38 884 - -
Trre3g00561 935 Gene3D Ribonuclease Inhibitor 188 429 IPR032675 -
Trre3g00561 935 ProSiteProfiles Leucine-rich repeat profile. 267 289 IPR001611 GO:0005515
Trre3g00561 935 MobiDBLite consensus disorder prediction 895 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00561 Trre-Chr3 3785855 3791354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00561 10 935 Receptor kinase-like Gene Family AT5G49760 51.261 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre3g00561 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00561 - - mtr:11440804 1553.88