Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00531 ATGGGGTTAATCGATCTCAACACTACTGAGGAAGATGAAACTCCTTATTCAGCTATTTCTTCTTCCTCTTCTTCTTCTCACTCTGGTATAAGTACTTCTGCTTCAGCTATGGTTGTTCCTCTTCAAACTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTACCAAAGAAAGGAAGCATTGTTGTTTATGTTCCACAGGGTCACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAATATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTTCATGCAGAGGAAGGAAGTGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTTCGGGAAGGGGTAATCGATGTTGATGCGGAAGAGGAGGATGCTGAAGCTATTGTGAAGTCAACAACACCTCATATGTTCTGTAAGACTCTCACAGCTTCTGACACTAGTACTCATGGAGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCTTCACAAGAGCTTGTAGCTAAGGATCTGCATGGCTTGGAGTGGAGGTTTCGTCACATATATAGGGGGCAGCCAAGGAGGCATTTGCTGACAACCGGGTGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGACTAGGAATTCGAAGGGCGGTGCAGTTGAAAAGTTCTGGTTCCTTTGCAGCTCCTTCTGGTATGCAATTGGATCCCGGCTCTCTCATGGATGTTGTGAATGCTTTATCTAAAAGATCTTCCTTCAGTGTTTGCTATAATCCAAGGGTCAGTTCTTCGGAATTCATCATACCTGTCAACAAATTCATGAAGAGCCTTGATTGTTCTTATTCTGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATTCTGCAGAGCGAAGATTTACTGGATTAATTGCTGGAATAAATGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAAATGCCTGTTGGTAAGGTGGGATGATATAGAAGCATCAAGGCATAATAGGGTTTCCCCTTGGGAAATCGAGCCATCTGGTTCTGCTTCCAGCAACCTCATGGCAGCTAGTTTGAAGAGGACCAGGATTGGAATCACTTCAGGGAAGCTAGAATTTCCAGTTCCTAATGGAATTGGAGCGTCAGACTTTGGGGAATCTTTGAGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATTAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATATGAGCTAGGGAGATGCTATCCTGGTTCAAACTGTTCCGGGATTGCTGCAACAGGAAATATCAGAATGCCGCAAGCAGCTTCTGATTTTCCAGGTAACAGCACAGGCTTTAGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCATGTCCACCCTACGGTCGAGCGTCATTTGATGAGACCCGTGGAAATGGTTGCTTTGGACGTTATGATGGTTATCAACTTCTCGGCTCTAGAAATGGATGGCCTGCACAGATGCATGACAATTCTTCACATTTGCATGCATCTGTCACTGCTGGACAAGTTTCATCTCCATCATCTGTGTTGATGTTCCAGCATGCTGTTAATCCAGTTTCAAACTCTCGTTATGATATTGGTAATCACAATCAGGGTTTATACATACCTGAAGCGAAAAATGGAATGTTTGCGCCTGCGATATCTGACAAACCTATCTTCTCTAGTGGACTAGCTCAAGAAGGCATAAATTCTTTCGGTGCTAATAATTTTCTTAACAATAATCAGTTTGACAGTTCAAGGTCTCATGATTCGGTGTCAACACCGAGAGGCAATCAAGATATGCTTTCATCATGTAAAACTGGCTGCAGACTCTTTGGATTTTCATTAACCGACGACACACATGTTGGAAGTAAAGAGGCTGCTGTTGCCTCTACCATCACTTCTCGATTCAATAAGGACTACGGTGGCGGTTGA 2082 0.4356 MGLIDLNTTEEDETPYSAISSSSSSSHSGISTSASAMVVPLQTSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDVDAEEEDAEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKSSGSFAAPSGMQLDPGSLMDVVNALSKRSSFSVCYNPRVSSSEFIIPVNKFMKSLDCSYSVGMRFRMRFETEDSAERRFTGLIAGINDVDPVRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSNLMAASLKRTRIGITSGKLEFPVPNGIGASDFGESLRFQKVLQGQEIMGINTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMPQAASDFPGNSTGFSESFRFQKVLQGQEILPCPPYGRASFDETRGNGCFGRYDGYQLLGSRNGWPAQMHDNSSHLHASVTAGQVSSPSSVLMFQHAVNPVSNSRYDIGNHNQGLYIPEAKNGMFAPAISDKPIFSSGLAQEGINSFGANNFLNNNQFDSSRSHDSVSTPRGNQDMLSSCKTGCRLFGFSLTDDTHVGSKEAAVASTITSRFNKDYGGG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00531 693 CDD B3_DNA 151 253 IPR003340 GO:0003677
Trre3g00531 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre3g00531 693 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Trre3g00531 693 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre3g00531 693 Gene3D - 316 390 - -
Trre3g00531 693 MobiDBLite consensus disorder prediction 10 26 - -
Trre3g00531 693 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g00531 693 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
Trre3g00531 693 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Trre3g00531 693 Gene3D - 151 255 IPR015300 -
Trre3g00531 693 FunFam Auxin response factor 151 255 - -
Trre3g00531 693 FunFam Auxin response factor 316 387 - -
Trre3g00531 693 SMART B3_2 153 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00531 Trre-Chr3 3617246 3621574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00531 152 507 B3 DNA Binding Superfamily AT2G33860 59.557 1.59e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre3g00531 B3 3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00531 K14486 - gmx:100789906 1041.18