Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00526 ATGACTTGGTGCAATGACTCTAACCATGAAGAGAATGAATTAATCACTCCATCTGAAGATAATAACAACAACACTGATGTTAGTGATCATCACATGAAGCTCAATGAAGAAATTCAAATCATAAAATGTCCTTCATGTAGCCATAACATTGAAGTCAAAAATCAGGGTGGAATTAATGATTTGCCTGGGTTACCAGCTGGAGTAAAATTTGATCCAAATGACATAGAAATATTACAACATTTGGAGGCAAAAGTGATGTCTGATGTGTGCAAGATTCATCCACTTATTGATCAATTCATACCAACACTTGAAGGAGAAAATGGAATTTGTTATACACACCCAGAAAAATTACCAGGAGTGAACAAAGATGGACAAATCCGCCACTTTTTTCATAGACCTTCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAAACAAGATGGCATAAAACAGGGAAAACTAGAGCAGTTTTTGTTAATGGTGTTGTTAAAGGTTTTAAAAAGATATTAGTGCTTTACACAAATTATTGCAAACAAGGAAAACCAGAGAAAACTAATTGGGTTATGCATCAATATCATCTTGGTAGTAATGAAGAAGAAAGAGATGGAGAATTAGTTGCTTCAAAAGTTTTCTACCAAACACAACCTAGACAAAGTGGTAATTCCAATTCCATTAGTAATGTAAGAGATTCTTCATATGATAAAATAATTAACAAAGGAAGTGGCCATGGTAATAACAGTTCAATACCTAACAATGAATGTTACAATGGTCCTTATACAAATTATGACCATAGGGAAAAGTCTCCACAATTTGTTCCAAACTTGGTTGTTCAAGGTGATGGATCTATTATTAGGTTAGCAATGGATGCAAACAAAGTAAGAGTACTAGAAAGAAAGTGA 930 0.3398 MTWCNDSNHEENELITPSEDNNNNTDVSDHHMKLNEEIQIIKCPSCSHNIEVKNQGGINDLPGLPAGVKFDPNDIEILQHLEAKVMSDVCKIHPLIDQFIPTLEGENGICYTHPEKLPGVNKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFVNGVVKGFKKILVLYTNYCKQGKPEKTNWVMHQYHLGSNEEERDGELVASKVFYQTQPRQSGNSNSISNVRDSSYDKIINKGSGHGNNSSIPNNECYNGPYTNYDHREKSPQFVPNLVVQGDGSIIRLAMDANKVRVLERK 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00526 309 FunFam NAC domain-containing protein 73 73 227 - -
Trre3g00526 309 MobiDBLite consensus disorder prediction 138 158 - -
Trre3g00526 309 SUPERFAMILY NAC domain 59 223 IPR036093 GO:0003677|GO:0006355
Trre3g00526 309 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 22 243 IPR044799 GO:0003700
Trre3g00526 309 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g00526 309 MobiDBLite consensus disorder prediction 1 28 - -
Trre3g00526 309 Gene3D NAC domain 74 227 IPR036093 GO:0003677|GO:0006355
Trre3g00526 309 MobiDBLite consensus disorder prediction 143 158 - -
Trre3g00526 309 Pfam No apical meristem (NAM) protein 65 204 IPR003441 GO:0003677|GO:0006355
Trre3g00526 309 ProSiteProfiles NAC domain profile. 64 223 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00526 Trre-Chr3 3580227 3583405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00526 1 243 NAC Transcription Factor Family AT4G28500 65.600 7.73e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre3g00526 NAM 6.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00526 - - gmx:100809389 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00526 3 3580227 3583405 Trre3g00526 3 3580227 3583405 ECH